Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 76844 | 0.67 | 0.959351 |
Target: 5'- uGCCCAccGAGCGCGgcuuaguauaCGuGgACCUCGg -3' miRNA: 3'- -CGGGUcuUUUGCGCa---------GCuCgUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 126497 | 0.67 | 0.959351 |
Target: 5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3' miRNA: 3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 158386 | 0.67 | 0.959351 |
Target: 5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3' miRNA: 3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 128703 | 0.67 | 0.943007 |
Target: 5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3' miRNA: 3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76397 | 0.67 | 0.943007 |
Target: 5'- cGCCUcGAGGGCGUGgcacauaGGGCGCC-CGg -3' miRNA: 3'- -CGGGuCUUUUGCGCag-----CUCGUGGaGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 160047 | 0.67 | 0.947441 |
Target: 5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3' miRNA: 3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 146581 | 0.68 | 0.928279 |
Target: 5'- cGCCuCAGgcGAUGUGUCG-GUACuCUCa -3' miRNA: 3'- -CGG-GUCuuUUGCGCAGCuCGUG-GAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 114262 | 0.68 | 0.917262 |
Target: 5'- uGUCCAccgcGAAGCGCGUCGuGGCAucaaugccccCCUCGu -3' miRNA: 3'- -CGGGUc---UUUUGCGCAGC-UCGU----------GGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 113637 | 0.68 | 0.933427 |
Target: 5'- uUCCAGguAGCGCGggcgUGAGCGCUUg- -3' miRNA: 3'- cGGGUCuuUUGCGCa---GCUCGUGGAgc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 117713 | 0.68 | 0.938336 |
Target: 5'- cCCCGGAuacuAGCGUGcCGAGCACa--- -3' miRNA: 3'- cGGGUCUu---UUGCGCaGCUCGUGgagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 153777 | 0.68 | 0.92289 |
Target: 5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3' miRNA: 3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 34751 | 0.68 | 0.92289 |
Target: 5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3' miRNA: 3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 159013 | 0.68 | 0.928279 |
Target: 5'- -gCCAGGAGcaggucuccGCGCGcaggGAGCACCUCc -3' miRNA: 3'- cgGGUCUUU---------UGCGCag--CUCGUGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 107001 | 0.68 | 0.928279 |
Target: 5'- cGCCUGGAuauAUGCGauuuUUGGGCACCgCGg -3' miRNA: 3'- -CGGGUCUuu-UGCGC----AGCUCGUGGaGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 100544 | 0.68 | 0.911394 |
Target: 5'- aGUCCGGAcGACGCucgCGGGCAUgUUGa -3' miRNA: 3'- -CGGGUCUuUUGCGca-GCUCGUGgAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 56588 | 0.68 | 0.938336 |
Target: 5'- cGCCguCAGc--AgGCG-CGAGCGCCUCGc -3' miRNA: 3'- -CGG--GUCuuuUgCGCaGCUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 131050 | 0.69 | 0.905289 |
Target: 5'- aGCCCAGAgacgacccGAAUGCGUCcGAGaCGCUa-- -3' miRNA: 3'- -CGGGUCU--------UUUGCGCAG-CUC-GUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 101350 | 0.69 | 0.898948 |
Target: 5'- aGCCgAGAccgcgGGGCGCGUCGGcGCGCUa-- -3' miRNA: 3'- -CGGgUCU-----UUUGCGCAGCU-CGUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 109266 | 0.69 | 0.898948 |
Target: 5'- cGCC------ACGCGUCGGGCGCgUCGu -3' miRNA: 3'- -CGGgucuuuUGCGCAGCUCGUGgAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76693 | 0.69 | 0.905289 |
Target: 5'- uGCCCAGcuuGGCGCGgagCGcGGCGCaaCUCGc -3' miRNA: 3'- -CGGGUCuu-UUGCGCa--GC-UCGUG--GAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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