Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 34751 | 0.68 | 0.92289 |
Target: 5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3' miRNA: 3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 153777 | 0.68 | 0.92289 |
Target: 5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3' miRNA: 3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 107001 | 0.68 | 0.928279 |
Target: 5'- cGCCUGGAuauAUGCGauuuUUGGGCACCgCGg -3' miRNA: 3'- -CGGGUCUuu-UGCGC----AGCUCGUGGaGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 159013 | 0.68 | 0.928279 |
Target: 5'- -gCCAGGAGcaggucuccGCGCGcaggGAGCACCUCc -3' miRNA: 3'- cgGGUCUUU---------UGCGCag--CUCGUGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 146581 | 0.68 | 0.928279 |
Target: 5'- cGCCuCAGgcGAUGUGUCG-GUACuCUCa -3' miRNA: 3'- -CGG-GUCuuUUGCGCAGCuCGUG-GAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 113637 | 0.68 | 0.933427 |
Target: 5'- uUCCAGguAGCGCGggcgUGAGCGCUUg- -3' miRNA: 3'- cGGGUCuuUUGCGCa---GCUCGUGGAgc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 56588 | 0.68 | 0.938336 |
Target: 5'- cGCCguCAGc--AgGCG-CGAGCGCCUCGc -3' miRNA: 3'- -CGG--GUCuuuUgCGCaGCUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 117713 | 0.68 | 0.938336 |
Target: 5'- cCCCGGAuacuAGCGUGcCGAGCACa--- -3' miRNA: 3'- cGGGUCUu---UUGCGCaGCUCGUGgagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 9676 | 0.67 | 0.943007 |
Target: 5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3' miRNA: 3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76397 | 0.67 | 0.943007 |
Target: 5'- cGCCUcGAGGGCGUGgcacauaGGGCGCC-CGg -3' miRNA: 3'- -CGGGuCUUUUGCGCag-----CUCGUGGaGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 128703 | 0.67 | 0.943007 |
Target: 5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3' miRNA: 3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 41020 | 0.67 | 0.947441 |
Target: 5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3' miRNA: 3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 93579 | 0.67 | 0.947441 |
Target: 5'- cGCCCcauggcagcGGAugAGGCGCG-CGAGUACCa-- -3' miRNA: 3'- -CGGG---------UCU--UUUGCGCaGCUCGUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 160047 | 0.67 | 0.947441 |
Target: 5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3' miRNA: 3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 101034 | 0.67 | 0.947441 |
Target: 5'- uGCCCGGc-GAUGCccgcggcccgGUgGAGCugCUCGa -3' miRNA: 3'- -CGGGUCuuUUGCG----------CAgCUCGugGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 119968 | 0.67 | 0.951641 |
Target: 5'- cCCCGGAcGACGUGUUGAGaCACa--- -3' miRNA: 3'- cGGGUCUuUUGCGCAGCUC-GUGgagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 77054 | 0.67 | 0.951641 |
Target: 5'- aCCCGGAAGAgGCGcgCGAGCuACUa-- -3' miRNA: 3'- cGGGUCUUUUgCGCa-GCUCG-UGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 137287 | 0.67 | 0.951641 |
Target: 5'- cCCUGGAcGAGCGCGaCaAGCGCCUUGu -3' miRNA: 3'- cGGGUCU-UUUGCGCaGcUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 38413 | 0.67 | 0.951641 |
Target: 5'- gGCCgCGGAGcACGCGcucugCGAGUuCCUUGu -3' miRNA: 3'- -CGG-GUCUUuUGCGCa----GCUCGuGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 82362 | 0.67 | 0.951641 |
Target: 5'- -gCCAGGcAGGCGCGUCGAuccgGUGCCgggCGc -3' miRNA: 3'- cgGGUCU-UUUGCGCAGCU----CGUGGa--GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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