miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 121251 0.67 0.951641
Target:  5'- gGCCCAuGuuuAGACGCcacGUCGAGCGgUUCc -3'
miRNA:   3'- -CGGGU-Cu--UUUGCG---CAGCUCGUgGAGc -5'
24377 3' -53.8 NC_005264.1 + 22511 0.67 0.95561
Target:  5'- aCCCAGAGAugGauugugguauCGUCGGGCugaUCGg -3'
miRNA:   3'- cGGGUCUUUugC----------GCAGCUCGuggAGC- -5'
24377 3' -53.8 NC_005264.1 + 146204 0.67 0.95561
Target:  5'- cGCaCCAGAGacgcacucGACGUGUCGAuCGCCg-- -3'
miRNA:   3'- -CG-GGUCUU--------UUGCGCAGCUcGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 116403 0.67 0.957133
Target:  5'- aGCCgCAGGc--CGaCGUCGAGCgcagggcggcgugcaGCCUCGc -3'
miRNA:   3'- -CGG-GUCUuuuGC-GCAGCUCG---------------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 158386 0.67 0.959351
Target:  5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3'
miRNA:   3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 7470 0.67 0.959351
Target:  5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3'
miRNA:   3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 126497 0.67 0.959351
Target:  5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3'
miRNA:   3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 39359 0.67 0.959351
Target:  5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3'
miRNA:   3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 76844 0.67 0.959351
Target:  5'- uGCCCAccGAGCGCGgcuuaguauaCGuGgACCUCGg -3'
miRNA:   3'- -CGGGUcuUUUGCGCa---------GCuCgUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 30809 0.67 0.959713
Target:  5'- gGCCCAGAcagGAGuCGCGUCccuaaaacguaaucuGGCGCCggUCGg -3'
miRNA:   3'- -CGGGUCU---UUU-GCGCAGc--------------UCGUGG--AGC- -5'
24377 3' -53.8 NC_005264.1 + 36590 0.66 0.962184
Target:  5'- cGCCCAGGAugguauaaagauACGCcUUGAGCGCUccCGa -3'
miRNA:   3'- -CGGGUCUUu-----------UGCGcAGCUCGUGGa-GC- -5'
24377 3' -53.8 NC_005264.1 + 34110 0.66 0.96287
Target:  5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3'
miRNA:   3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 8379 0.66 0.96287
Target:  5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3'
miRNA:   3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5'
24377 3' -53.8 NC_005264.1 + 127406 0.66 0.96287
Target:  5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3'
miRNA:   3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5'
24377 3' -53.8 NC_005264.1 + 153137 0.66 0.96287
Target:  5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3'
miRNA:   3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 101439 0.66 0.966171
Target:  5'- aCCCGGAAGcgGCGaagGAGCGCCUgGa -3'
miRNA:   3'- cGGGUCUUUugCGCag-CUCGUGGAgC- -5'
24377 3' -53.8 NC_005264.1 + 94342 0.66 0.966171
Target:  5'- cCCCAGAAAGC-CGUCGccGCguucgaucuaaACCUCa -3'
miRNA:   3'- cGGGUCUUUUGcGCAGCu-CG-----------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 83132 0.66 0.966171
Target:  5'- gGCCgCGG-AGGCGCGUCu-GC-CCUCa -3'
miRNA:   3'- -CGG-GUCuUUUGCGCAGcuCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 59001 0.66 0.966171
Target:  5'- gGCCCAGAAGcuugGCGCucagcgaaUCGAGCGCa--- -3'
miRNA:   3'- -CGGGUCUUU----UGCGc-------AGCUCGUGgagc -5'
24377 3' -53.8 NC_005264.1 + 100727 0.66 0.96926
Target:  5'- gGCUCuggAGAGGGCGCugGUCGAGCucGCCgaggCGu -3'
miRNA:   3'- -CGGG---UCUUUUGCG--CAGCUCG--UGGa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.