miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 83132 0.66 0.966171
Target:  5'- gGCCgCGG-AGGCGCGUCu-GC-CCUCa -3'
miRNA:   3'- -CGG-GUCuUUUGCGCAGcuCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 85619 0.7 0.871298
Target:  5'- cGUCUuuAGGAAGCGCGcCGAGCcacuugguuAUCUCGg -3'
miRNA:   3'- -CGGG--UCUUUUGCGCaGCUCG---------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 85707 0.71 0.79715
Target:  5'- aGCCaugaAAAACGCGgugcgCGAGCACCUUu -3'
miRNA:   3'- -CGGguc-UUUUGCGCa----GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 88086 0.72 0.740648
Target:  5'- cGCCaagCAGu--GCGCGUCGGGCACagcgUCGg -3'
miRNA:   3'- -CGG---GUCuuuUGCGCAGCUCGUGg---AGC- -5'
24377 3' -53.8 NC_005264.1 + 90934 0.65 0.976586
Target:  5'- cGCCaugaAGAAcaGGCaaaacacgguguuuGCGUCGGGCGCCcgCGu -3'
miRNA:   3'- -CGGg---UCUU--UUG--------------CGCAGCUCGUGGa-GC- -5'
24377 3' -53.8 NC_005264.1 + 93579 0.67 0.947441
Target:  5'- cGCCCcauggcagcGGAugAGGCGCG-CGAGUACCa-- -3'
miRNA:   3'- -CGGG---------UCU--UUUGCGCaGCUCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 94342 0.66 0.966171
Target:  5'- cCCCAGAAAGC-CGUCGccGCguucgaucuaaACCUCa -3'
miRNA:   3'- cGGGUCUUUUGcGCAGCu-CG-----------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 95953 0.71 0.806096
Target:  5'- gGUCCGGGAuAugGUGUCGcGGCugCUCu -3'
miRNA:   3'- -CGGGUCUU-UugCGCAGC-UCGugGAGc -5'
24377 3' -53.8 NC_005264.1 + 96280 0.72 0.740648
Target:  5'- cUCCAucguAGACGCGcUCGuGCGCCUCGg -3'
miRNA:   3'- cGGGUcu--UUUGCGC-AGCuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 97656 0.7 0.840212
Target:  5'- uGCCguGAAAGCGCugacUCauGGCGCCUCGu -3'
miRNA:   3'- -CGGguCUUUUGCGc---AGc-UCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 97937 0.74 0.650094
Target:  5'- aGUCCAGAGcuuCGCGUCGAGguCAUCUCc -3'
miRNA:   3'- -CGGGUCUUuu-GCGCAGCUC--GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 100544 0.68 0.911394
Target:  5'- aGUCCGGAcGACGCucgCGGGCAUgUUGa -3'
miRNA:   3'- -CGGGUCUuUUGCGca-GCUCGUGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 100727 0.66 0.96926
Target:  5'- gGCUCuggAGAGGGCGCugGUCGAGCucGCCgaggCGu -3'
miRNA:   3'- -CGGG---UCUUUUGCG--CAGCUCG--UGGa---GC- -5'
24377 3' -53.8 NC_005264.1 + 101034 0.67 0.947441
Target:  5'- uGCCCGGc-GAUGCccgcggcccgGUgGAGCugCUCGa -3'
miRNA:   3'- -CGGGUCuuUUGCG----------CAgCUCGugGAGC- -5'
24377 3' -53.8 NC_005264.1 + 101350 0.69 0.898948
Target:  5'- aGCCgAGAccgcgGGGCGCGUCGGcGCGCUa-- -3'
miRNA:   3'- -CGGgUCU-----UUUGCGCAGCU-CGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 101439 0.66 0.966171
Target:  5'- aCCCGGAAGcgGCGaagGAGCGCCUgGa -3'
miRNA:   3'- cGGGUCUUUugCGCag-CUCGUGGAgC- -5'
24377 3' -53.8 NC_005264.1 + 103507 0.65 0.976586
Target:  5'- cGCgaCAGGcuguucauguacauGGACGUGUCGAGCGCUa-- -3'
miRNA:   3'- -CGg-GUCU--------------UUUGCGCAGCUCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 104210 0.66 0.972142
Target:  5'- cGCCgCAGAGcACGCGUCGcacGGguCaUCGg -3'
miRNA:   3'- -CGG-GUCUUuUGCGCAGC---UCguGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 105558 0.7 0.85382
Target:  5'- aGCUCAGGAuacaauggagaccccCGCGggcuagggcUCGAGCGCCUCa -3'
miRNA:   3'- -CGGGUCUUuu-------------GCGC---------AGCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 107001 0.68 0.928279
Target:  5'- cGCCUGGAuauAUGCGauuuUUGGGCACCgCGg -3'
miRNA:   3'- -CGGGUCUuu-UGCGC----AGCUCGUGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.