Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 109266 | 0.69 | 0.898948 |
Target: 5'- cGCC------ACGCGUCGGGCGCgUCGu -3' miRNA: 3'- -CGGgucuuuUGCGCAGCUCGUGgAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 113195 | 0.72 | 0.759961 |
Target: 5'- aCCCGacGucCGgGUCGAGCACCUUGg -3' miRNA: 3'- cGGGUcuUuuGCgCAGCUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 113637 | 0.68 | 0.933427 |
Target: 5'- uUCCAGguAGCGCGggcgUGAGCGCUUg- -3' miRNA: 3'- cGGGUCuuUUGCGCa---GCUCGUGGAgc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 114262 | 0.68 | 0.917262 |
Target: 5'- uGUCCAccgcGAAGCGCGUCGuGGCAucaaugccccCCUCGu -3' miRNA: 3'- -CGGGUc---UUUUGCGCAGC-UCGU----------GGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 114452 | 0.76 | 0.548241 |
Target: 5'- cGCCUcGAcGAa-CGUCGAGCGCCUCGa -3' miRNA: 3'- -CGGGuCUuUUgcGCAGCUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 114692 | 0.73 | 0.690863 |
Target: 5'- cGCCgagcaGGAuuGCGCGgucUCGuGCGCCUCGa -3' miRNA: 3'- -CGGg----UCUuuUGCGC---AGCuCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 116403 | 0.67 | 0.957133 |
Target: 5'- aGCCgCAGGc--CGaCGUCGAGCgcagggcggcgugcaGCCUCGc -3' miRNA: 3'- -CGG-GUCUuuuGC-GCAGCUCG---------------UGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 117713 | 0.68 | 0.938336 |
Target: 5'- cCCCGGAuacuAGCGUGcCGAGCACa--- -3' miRNA: 3'- cGGGUCUu---UUGCGCaGCUCGUGgagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 119968 | 0.67 | 0.951641 |
Target: 5'- cCCCGGAcGACGUGUUGAGaCACa--- -3' miRNA: 3'- cGGGUCUuUUGCGCAGCUC-GUGgagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 121251 | 0.67 | 0.951641 |
Target: 5'- gGCCCAuGuuuAGACGCcacGUCGAGCGgUUCc -3' miRNA: 3'- -CGGGU-Cu--UUUGCG---CAGCUCGUgGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 126497 | 0.67 | 0.959351 |
Target: 5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3' miRNA: 3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 126626 | 1.12 | 0.003455 |
Target: 5'- aGCCCAGAAAACGCGUCGAGCACCUCGg -3' miRNA: 3'- -CGGGUCUUUUGCGCAGCUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 127406 | 0.66 | 0.96287 |
Target: 5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3' miRNA: 3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 128559 | 0.76 | 0.538262 |
Target: 5'- gGCCCucGAAcuuacucuucGACGCGUCGcccGCGCCUCGc -3' miRNA: 3'- -CGGGu-CUU----------UUGCGCAGCu--CGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 128703 | 0.67 | 0.943007 |
Target: 5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3' miRNA: 3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 131050 | 0.69 | 0.905289 |
Target: 5'- aGCCCAGAgacgacccGAAUGCGUCcGAGaCGCUa-- -3' miRNA: 3'- -CGGGUCU--------UUUGCGCAG-CUC-GUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 131914 | 0.73 | 0.690863 |
Target: 5'- aCCCGGAcGGAC-CGUCGAGCcgcccgGCCUCGc -3' miRNA: 3'- cGGGUCU-UUUGcGCAGCUCG------UGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 137287 | 0.67 | 0.951641 |
Target: 5'- cCCUGGAcGAGCGCGaCaAGCGCCUUGu -3' miRNA: 3'- cGGGUCU-UUUGCGCaGcUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 143854 | 0.66 | 0.975842 |
Target: 5'- cGCCCAuGAAGGCGCacgaagacucuauaaGUCG-GCGCggCGg -3' miRNA: 3'- -CGGGU-CUUUUGCG---------------CAGCuCGUGgaGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 146204 | 0.67 | 0.95561 |
Target: 5'- cGCaCCAGAGacgcacucGACGUGUCGAuCGCCg-- -3' miRNA: 3'- -CG-GGUCUU--------UUGCGCAGCUcGUGGagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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