miRNA display CGI


Results 81 - 94 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 146520 0.66 0.97404
Target:  5'- uUCCAGAGcuACGCGUCGAgaguGCggcgcacauccccaGCCUCu -3'
miRNA:   3'- cGGGUCUUu-UGCGCAGCU----CG--------------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 146581 0.68 0.928279
Target:  5'- cGCCuCAGgcGAUGUGUCG-GUACuCUCa -3'
miRNA:   3'- -CGG-GUCuuUUGCGCAGCuCGUG-GAGc -5'
24377 3' -53.8 NC_005264.1 + 150605 0.66 0.96926
Target:  5'- gGCgCCAGAGGugGgG-CGAGuCugCUCu -3'
miRNA:   3'- -CG-GGUCUUUugCgCaGCUC-GugGAGc -5'
24377 3' -53.8 NC_005264.1 + 152529 0.73 0.720954
Target:  5'- uGCUCAGu--GCGCGUCGcuGCGCC-CGg -3'
miRNA:   3'- -CGGGUCuuuUGCGCAGCu-CGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 153137 0.66 0.96287
Target:  5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3'
miRNA:   3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 153296 0.71 0.826903
Target:  5'- gGCgCGGgcGACGCGUCGAagaguaaguucgaggGCcCCUCGa -3'
miRNA:   3'- -CGgGUCuuUUGCGCAGCU---------------CGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 153777 0.68 0.92289
Target:  5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3'
miRNA:   3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 153814 0.72 0.759005
Target:  5'- -gCCAGGcgcGAACGCGUCGGGacuaacggcggcuCGCCUCa -3'
miRNA:   3'- cgGGUCU---UUUGCGCAGCUC-------------GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 154809 0.71 0.806982
Target:  5'- --gCGGAGGGCGCGguggcgccgucguggCGGGCGCCUCu -3'
miRNA:   3'- cggGUCUUUUGCGCa--------------GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 157036 0.71 0.788055
Target:  5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3'
miRNA:   3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 158386 0.67 0.959351
Target:  5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3'
miRNA:   3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 159013 0.68 0.928279
Target:  5'- -gCCAGGAGcaggucuccGCGCGcaggGAGCACCUCc -3'
miRNA:   3'- cgGGUCUUU---------UGCGCag--CUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 160047 0.67 0.947441
Target:  5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3'
miRNA:   3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5'
24377 3' -53.8 NC_005264.1 + 162570 0.71 0.823503
Target:  5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3'
miRNA:   3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.