miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 128559 0.76 0.538262
Target:  5'- gGCCCucGAAcuuacucuucGACGCGUCGcccGCGCCUCGc -3'
miRNA:   3'- -CGGGu-CUU----------UUGCGCAGCu--CGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 127406 0.66 0.96287
Target:  5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3'
miRNA:   3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5'
24377 3' -53.8 NC_005264.1 + 126626 1.12 0.003455
Target:  5'- aGCCCAGAAAACGCGUCGAGCACCUCGg -3'
miRNA:   3'- -CGGGUCUUUUGCGCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 126497 0.67 0.959351
Target:  5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3'
miRNA:   3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 121251 0.67 0.951641
Target:  5'- gGCCCAuGuuuAGACGCcacGUCGAGCGgUUCc -3'
miRNA:   3'- -CGGGU-Cu--UUUGCG---CAGCUCGUgGAGc -5'
24377 3' -53.8 NC_005264.1 + 119968 0.67 0.951641
Target:  5'- cCCCGGAcGACGUGUUGAGaCACa--- -3'
miRNA:   3'- cGGGUCUuUUGCGCAGCUC-GUGgagc -5'
24377 3' -53.8 NC_005264.1 + 117713 0.68 0.938336
Target:  5'- cCCCGGAuacuAGCGUGcCGAGCACa--- -3'
miRNA:   3'- cGGGUCUu---UUGCGCaGCUCGUGgagc -5'
24377 3' -53.8 NC_005264.1 + 116403 0.67 0.957133
Target:  5'- aGCCgCAGGc--CGaCGUCGAGCgcagggcggcgugcaGCCUCGc -3'
miRNA:   3'- -CGG-GUCUuuuGC-GCAGCUCG---------------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 114692 0.73 0.690863
Target:  5'- cGCCgagcaGGAuuGCGCGgucUCGuGCGCCUCGa -3'
miRNA:   3'- -CGGg----UCUuuUGCGC---AGCuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 114452 0.76 0.548241
Target:  5'- cGCCUcGAcGAa-CGUCGAGCGCCUCGa -3'
miRNA:   3'- -CGGGuCUuUUgcGCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 114262 0.68 0.917262
Target:  5'- uGUCCAccgcGAAGCGCGUCGuGGCAucaaugccccCCUCGu -3'
miRNA:   3'- -CGGGUc---UUUUGCGCAGC-UCGU----------GGAGC- -5'
24377 3' -53.8 NC_005264.1 + 113637 0.68 0.933427
Target:  5'- uUCCAGguAGCGCGggcgUGAGCGCUUg- -3'
miRNA:   3'- cGGGUCuuUUGCGCa---GCUCGUGGAgc -5'
24377 3' -53.8 NC_005264.1 + 113195 0.72 0.759961
Target:  5'- aCCCGacGucCGgGUCGAGCACCUUGg -3'
miRNA:   3'- cGGGUcuUuuGCgCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 109266 0.69 0.898948
Target:  5'- cGCC------ACGCGUCGGGCGCgUCGu -3'
miRNA:   3'- -CGGgucuuuUGCGCAGCUCGUGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 107001 0.68 0.928279
Target:  5'- cGCCUGGAuauAUGCGauuuUUGGGCACCgCGg -3'
miRNA:   3'- -CGGGUCUuu-UGCGC----AGCUCGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 105558 0.7 0.85382
Target:  5'- aGCUCAGGAuacaauggagaccccCGCGggcuagggcUCGAGCGCCUCa -3'
miRNA:   3'- -CGGGUCUUuu-------------GCGC---------AGCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 104210 0.66 0.972142
Target:  5'- cGCCgCAGAGcACGCGUCGcacGGguCaUCGg -3'
miRNA:   3'- -CGG-GUCUUuUGCGCAGC---UCguGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 103507 0.65 0.976586
Target:  5'- cGCgaCAGGcuguucauguacauGGACGUGUCGAGCGCUa-- -3'
miRNA:   3'- -CGg-GUCU--------------UUUGCGCAGCUCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 101439 0.66 0.966171
Target:  5'- aCCCGGAAGcgGCGaagGAGCGCCUgGa -3'
miRNA:   3'- cGGGUCUUUugCGCag-CUCGUGGAgC- -5'
24377 3' -53.8 NC_005264.1 + 101350 0.69 0.898948
Target:  5'- aGCCgAGAccgcgGGGCGCGUCGGcGCGCUa-- -3'
miRNA:   3'- -CGGgUCU-----UUUGCGCAGCU-CGUGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.