Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 101034 | 0.67 | 0.947441 |
Target: 5'- uGCCCGGc-GAUGCccgcggcccgGUgGAGCugCUCGa -3' miRNA: 3'- -CGGGUCuuUUGCG----------CAgCUCGugGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 100727 | 0.66 | 0.96926 |
Target: 5'- gGCUCuggAGAGGGCGCugGUCGAGCucGCCgaggCGu -3' miRNA: 3'- -CGGG---UCUUUUGCG--CAGCUCG--UGGa---GC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 100544 | 0.68 | 0.911394 |
Target: 5'- aGUCCGGAcGACGCucgCGGGCAUgUUGa -3' miRNA: 3'- -CGGGUCUuUUGCGca-GCUCGUGgAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 97937 | 0.74 | 0.650094 |
Target: 5'- aGUCCAGAGcuuCGCGUCGAGguCAUCUCc -3' miRNA: 3'- -CGGGUCUUuu-GCGCAGCUC--GUGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 97656 | 0.7 | 0.840212 |
Target: 5'- uGCCguGAAAGCGCugacUCauGGCGCCUCGu -3' miRNA: 3'- -CGGguCUUUUGCGc---AGc-UCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 96280 | 0.72 | 0.740648 |
Target: 5'- cUCCAucguAGACGCGcUCGuGCGCCUCGg -3' miRNA: 3'- cGGGUcu--UUUGCGC-AGCuCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 95953 | 0.71 | 0.806096 |
Target: 5'- gGUCCGGGAuAugGUGUCGcGGCugCUCu -3' miRNA: 3'- -CGGGUCUU-UugCGCAGC-UCGugGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 94342 | 0.66 | 0.966171 |
Target: 5'- cCCCAGAAAGC-CGUCGccGCguucgaucuaaACCUCa -3' miRNA: 3'- cGGGUCUUUUGcGCAGCu-CG-----------UGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 93579 | 0.67 | 0.947441 |
Target: 5'- cGCCCcauggcagcGGAugAGGCGCG-CGAGUACCa-- -3' miRNA: 3'- -CGGG---------UCU--UUUGCGCaGCUCGUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 90934 | 0.65 | 0.976586 |
Target: 5'- cGCCaugaAGAAcaGGCaaaacacgguguuuGCGUCGGGCGCCcgCGu -3' miRNA: 3'- -CGGg---UCUU--UUG--------------CGCAGCUCGUGGa-GC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 88086 | 0.72 | 0.740648 |
Target: 5'- cGCCaagCAGu--GCGCGUCGGGCACagcgUCGg -3' miRNA: 3'- -CGG---GUCuuuUGCGCAGCUCGUGg---AGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 85707 | 0.71 | 0.79715 |
Target: 5'- aGCCaugaAAAACGCGgugcgCGAGCACCUUu -3' miRNA: 3'- -CGGguc-UUUUGCGCa----GCUCGUGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 85619 | 0.7 | 0.871298 |
Target: 5'- cGUCUuuAGGAAGCGCGcCGAGCcacuugguuAUCUCGg -3' miRNA: 3'- -CGGG--UCUUUUGCGCaGCUCG---------UGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 83132 | 0.66 | 0.966171 |
Target: 5'- gGCCgCGG-AGGCGCGUCu-GC-CCUCa -3' miRNA: 3'- -CGG-GUCuUUUGCGCAGcuCGuGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 82362 | 0.67 | 0.951641 |
Target: 5'- -gCCAGGcAGGCGCGUCGAuccgGUGCCgggCGc -3' miRNA: 3'- cgGGUCU-UUUGCGCAGCU----CGUGGa--GC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 77054 | 0.67 | 0.951641 |
Target: 5'- aCCCGGAAGAgGCGcgCGAGCuACUa-- -3' miRNA: 3'- cGGGUCUUUUgCGCa-GCUCG-UGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76844 | 0.67 | 0.959351 |
Target: 5'- uGCCCAccGAGCGCGgcuuaguauaCGuGgACCUCGg -3' miRNA: 3'- -CGGGUcuUUUGCGCa---------GCuCgUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76693 | 0.69 | 0.905289 |
Target: 5'- uGCCCAGcuuGGCGCGgagCGcGGCGCaaCUCGc -3' miRNA: 3'- -CGGGUCuu-UUGCGCa--GC-UCGUG--GAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76397 | 0.67 | 0.943007 |
Target: 5'- cGCCUcGAGGGCGUGgcacauaGGGCGCC-CGg -3' miRNA: 3'- -CGGGuCUUUUGCGCag-----CUCGUGGaGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 68349 | 0.69 | 0.892375 |
Target: 5'- uGCCCAGAcguuGACGuCGUUGAGaaguCgCUCGg -3' miRNA: 3'- -CGGGUCUu---UUGC-GCAGCUCgu--G-GAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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