miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 65118 0.66 0.972142
Target:  5'- cUCCGGuGAACGCGaCGccaAGC-CCUCGg -3'
miRNA:   3'- cGGGUCuUUUGCGCaGC---UCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 62458 0.66 0.975842
Target:  5'- gGCCCuAGAAcaagaaucgguguuGCGCGUCGuGCGcgcguCCUCu -3'
miRNA:   3'- -CGGG-UCUUu-------------UGCGCAGCuCGU-----GGAGc -5'
24377 3' -53.8 NC_005264.1 + 61987 0.66 0.974824
Target:  5'- cGCCUGGucccAUGCGUCGAGgGagaaCUCGc -3'
miRNA:   3'- -CGGGUCuuu-UGCGCAGCUCgUg---GAGC- -5'
24377 3' -53.8 NC_005264.1 + 59792 0.69 0.885573
Target:  5'- cGCCCgcAGggGGCGCGUaGcGCACCa-- -3'
miRNA:   3'- -CGGG--UCuuUUGCGCAgCuCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 59001 0.66 0.966171
Target:  5'- gGCCCAGAAGcuugGCGCucagcgaaUCGAGCGCa--- -3'
miRNA:   3'- -CGGGUCUUU----UGCGc-------AGCUCGUGgagc -5'
24377 3' -53.8 NC_005264.1 + 56588 0.68 0.938336
Target:  5'- cGCCguCAGc--AgGCG-CGAGCGCCUCGc -3'
miRNA:   3'- -CGG--GUCuuuUgCGCaGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 51679 0.74 0.660329
Target:  5'- aCCCGGugguAACGCaGUUGAGCAUCUCc -3'
miRNA:   3'- cGGGUCuu--UUGCG-CAGCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 47587 0.69 0.885573
Target:  5'- gGCUCGcGggGACGCGUUGGGgGagaCUCGc -3'
miRNA:   3'- -CGGGU-CuuUUGCGCAGCUCgUg--GAGC- -5'
24377 3' -53.8 NC_005264.1 + 45566 0.7 0.848285
Target:  5'- cGCCCGuGucGGCGCGcaCGAGUcCCUCGg -3'
miRNA:   3'- -CGGGU-CuuUUGCGCa-GCUCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 43543 0.71 0.823503
Target:  5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3'
miRNA:   3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 41020 0.67 0.947441
Target:  5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3'
miRNA:   3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5'
24377 3' -53.8 NC_005264.1 + 39359 0.67 0.959351
Target:  5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3'
miRNA:   3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 38413 0.67 0.951641
Target:  5'- gGCCgCGGAGcACGCGcucugCGAGUuCCUUGu -3'
miRNA:   3'- -CGG-GUCUUuUGCGCa----GCUCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 38009 0.71 0.788055
Target:  5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3'
miRNA:   3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 36590 0.66 0.962184
Target:  5'- cGCCCAGGAugguauaaagauACGCcUUGAGCGCUccCGa -3'
miRNA:   3'- -CGGGUCUUu-----------UGCGcAGCUCGUGGa-GC- -5'
24377 3' -53.8 NC_005264.1 + 36163 0.66 0.972142
Target:  5'- aGCUCGGGAAGCGCGaCGGGacgaUCGc -3'
miRNA:   3'- -CGGGUCUUUUGCGCaGCUCguggAGC- -5'
24377 3' -53.8 NC_005264.1 + 35783 0.71 0.806982
Target:  5'- --gCGGAGGGCGCGguggcgccgucguggCGGGCGCCUCu -3'
miRNA:   3'- cggGUCUUUUGCGCa--------------GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 34751 0.68 0.92289
Target:  5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3'
miRNA:   3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 34269 0.71 0.826903
Target:  5'- gGCgCGGgcGACGCGUCGAagaguaaguucgaggGCcCCUCGa -3'
miRNA:   3'- -CGgGUCuuUUGCGCAGCU---------------CGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 34110 0.66 0.96287
Target:  5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3'
miRNA:   3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.