miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 107001 0.68 0.928279
Target:  5'- cGCCUGGAuauAUGCGauuuUUGGGCACCgCGg -3'
miRNA:   3'- -CGGGUCUuu-UGCGC----AGCUCGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 153777 0.68 0.92289
Target:  5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3'
miRNA:   3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 76693 0.69 0.905289
Target:  5'- uGCCCAGcuuGGCGCGgagCGcGGCGCaaCUCGc -3'
miRNA:   3'- -CGGGUCuu-UUGCGCa--GC-UCGUG--GAGC- -5'
24377 3' -53.8 NC_005264.1 + 109266 0.69 0.898948
Target:  5'- cGCC------ACGCGUCGGGCGCgUCGu -3'
miRNA:   3'- -CGGgucuuuUGCGCAGCUCGUGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 105558 0.7 0.85382
Target:  5'- aGCUCAGGAuacaauggagaccccCGCGggcuagggcUCGAGCGCCUCa -3'
miRNA:   3'- -CGGGUCUUuu-------------GCGC---------AGCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 45566 0.7 0.848285
Target:  5'- cGCCCGuGucGGCGCGcaCGAGUcCCUCGg -3'
miRNA:   3'- -CGGGU-CuuUUGCGCa-GCUCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 39359 0.67 0.959351
Target:  5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3'
miRNA:   3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 7470 0.67 0.959351
Target:  5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3'
miRNA:   3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 116403 0.67 0.957133
Target:  5'- aGCCgCAGGc--CGaCGUCGAGCgcagggcggcgugcaGCCUCGc -3'
miRNA:   3'- -CGG-GUCUuuuGC-GCAGCUCG---------------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 146204 0.67 0.95561
Target:  5'- cGCaCCAGAGacgcacucGACGUGUCGAuCGCCg-- -3'
miRNA:   3'- -CG-GGUCUU--------UUGCGCAGCUcGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 22511 0.67 0.95561
Target:  5'- aCCCAGAGAugGauugugguauCGUCGGGCugaUCGg -3'
miRNA:   3'- cGGGUCUUUugC----------GCAGCUCGuggAGC- -5'
24377 3' -53.8 NC_005264.1 + 119968 0.67 0.951641
Target:  5'- cCCCGGAcGACGUGUUGAGaCACa--- -3'
miRNA:   3'- cGGGUCUuUUGCGCAGCUC-GUGgagc -5'
24377 3' -53.8 NC_005264.1 + 8379 0.66 0.96287
Target:  5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3'
miRNA:   3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5'
24377 3' -53.8 NC_005264.1 + 34110 0.66 0.96287
Target:  5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3'
miRNA:   3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 83132 0.66 0.966171
Target:  5'- gGCCgCGG-AGGCGCGUCu-GC-CCUCa -3'
miRNA:   3'- -CGG-GUCuUUUGCGCAGcuCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 94342 0.66 0.966171
Target:  5'- cCCCAGAAAGC-CGUCGccGCguucgaucuaaACCUCa -3'
miRNA:   3'- cGGGUCUUUUGcGCAGCu-CG-----------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 101439 0.66 0.966171
Target:  5'- aCCCGGAAGcgGCGaagGAGCGCCUgGa -3'
miRNA:   3'- cGGGUCUUUugCGCag-CUCGUGGAgC- -5'
24377 3' -53.8 NC_005264.1 + 31578 0.66 0.96926
Target:  5'- gGCgCCAGAGGugGgG-CGAGuCugCUCu -3'
miRNA:   3'- -CG-GGUCUUUugCgCaGCUC-GugGAGc -5'
24377 3' -53.8 NC_005264.1 + 100727 0.66 0.96926
Target:  5'- gGCUCuggAGAGGGCGCugGUCGAGCucGCCgaggCGu -3'
miRNA:   3'- -CGGG---UCUUUUGCG--CAGCUCG--UGGa---GC- -5'
24377 3' -53.8 NC_005264.1 + 126626 1.12 0.003455
Target:  5'- aGCCCAGAAAACGCGUCGAGCACCUCGg -3'
miRNA:   3'- -CGGGUCUUUUGCGCAGCUCGUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.