Results 81 - 94 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 100727 | 0.66 | 0.96926 |
Target: 5'- gGCUCuggAGAGGGCGCugGUCGAGCucGCCgaggCGu -3' miRNA: 3'- -CGGG---UCUUUUGCG--CAGCUCG--UGGa---GC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 146204 | 0.67 | 0.95561 |
Target: 5'- cGCaCCAGAGacgcacucGACGUGUCGAuCGCCg-- -3' miRNA: 3'- -CG-GGUCUU--------UUGCGCAGCUcGUGGagc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 22511 | 0.67 | 0.95561 |
Target: 5'- aCCCAGAGAugGauugugguauCGUCGGGCugaUCGg -3' miRNA: 3'- cGGGUCUUUugC----------GCAGCUCGuggAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 159013 | 0.68 | 0.928279 |
Target: 5'- -gCCAGGAGcaggucuccGCGCGcaggGAGCACCUCc -3' miRNA: 3'- cgGGUCUUU---------UGCGCag--CUCGUGGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 146581 | 0.68 | 0.928279 |
Target: 5'- cGCCuCAGgcGAUGUGUCG-GUACuCUCa -3' miRNA: 3'- -CGG-GUCuuUUGCGCAGCuCGUG-GAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 56588 | 0.68 | 0.938336 |
Target: 5'- cGCCguCAGc--AgGCG-CGAGCGCCUCGc -3' miRNA: 3'- -CGG--GUCuuuUgCGCaGCUCGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 117713 | 0.68 | 0.938336 |
Target: 5'- cCCCGGAuacuAGCGUGcCGAGCACa--- -3' miRNA: 3'- cGGGUCUu---UUGCGCaGCUCGUGgagc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 9676 | 0.67 | 0.943007 |
Target: 5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3' miRNA: 3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 41020 | 0.67 | 0.947441 |
Target: 5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3' miRNA: 3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 101034 | 0.67 | 0.947441 |
Target: 5'- uGCCCGGc-GAUGCccgcggcccgGUgGAGCugCUCGa -3' miRNA: 3'- -CGGGUCuuUUGCG----------CAgCUCGugGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 82362 | 0.67 | 0.951641 |
Target: 5'- -gCCAGGcAGGCGCGUCGAuccgGUGCCgggCGc -3' miRNA: 3'- cgGGUCU-UUUGCGCAGCU----CGUGGa--GC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 121251 | 0.67 | 0.951641 |
Target: 5'- gGCCCAuGuuuAGACGCcacGUCGAGCGgUUCc -3' miRNA: 3'- -CGGGU-Cu--UUUGCG---CAGCUCGUgGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 119968 | 0.67 | 0.951641 |
Target: 5'- cCCCGGAcGACGUGUUGAGaCACa--- -3' miRNA: 3'- cGGGUCUuUUGCGCAGCUC-GUGgagc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 90934 | 0.65 | 0.976586 |
Target: 5'- cGCCaugaAGAAcaGGCaaaacacgguguuuGCGUCGGGCGCCcgCGu -3' miRNA: 3'- -CGGg---UCUU--UUG--------------CGCAGCUCGUGGa-GC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home