miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 159013 0.68 0.928279
Target:  5'- -gCCAGGAGcaggucuccGCGCGcaggGAGCACCUCc -3'
miRNA:   3'- cgGGUCUUU---------UGCGCag--CUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 117713 0.68 0.938336
Target:  5'- cCCCGGAuacuAGCGUGcCGAGCACa--- -3'
miRNA:   3'- cGGGUCUu---UUGCGCaGCUCGUGgagc -5'
24377 3' -53.8 NC_005264.1 + 116403 0.67 0.957133
Target:  5'- aGCCgCAGGc--CGaCGUCGAGCgcagggcggcgugcaGCCUCGc -3'
miRNA:   3'- -CGG-GUCUuuuGC-GCAGCUCG---------------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 101439 0.66 0.966171
Target:  5'- aCCCGGAAGcgGCGaagGAGCGCCUgGa -3'
miRNA:   3'- cGGGUCUUUugCGCag-CUCGUGGAgC- -5'
24377 3' -53.8 NC_005264.1 + 43543 0.71 0.823503
Target:  5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3'
miRNA:   3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 101350 0.69 0.898948
Target:  5'- aGCCgAGAccgcgGGGCGCGUCGGcGCGCUa-- -3'
miRNA:   3'- -CGGgUCU-----UUUGCGCAGCU-CGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 41020 0.67 0.947441
Target:  5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3'
miRNA:   3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5'
24377 3' -53.8 NC_005264.1 + 31578 0.66 0.96926
Target:  5'- gGCgCCAGAGGugGgG-CGAGuCugCUCu -3'
miRNA:   3'- -CG-GGUCUUUugCgCaGCUC-GugGAGc -5'
24377 3' -53.8 NC_005264.1 + 131050 0.69 0.905289
Target:  5'- aGCCCAGAgacgacccGAAUGCGUCcGAGaCGCUa-- -3'
miRNA:   3'- -CGGGUCU--------UUUGCGCAG-CUC-GUGGagc -5'
24377 3' -53.8 NC_005264.1 + 100727 0.66 0.96926
Target:  5'- gGCUCuggAGAGGGCGCugGUCGAGCucGCCgaggCGu -3'
miRNA:   3'- -CGGG---UCUUUUGCG--CAGCUCG--UGGa---GC- -5'
24377 3' -53.8 NC_005264.1 + 9676 0.67 0.943007
Target:  5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3'
miRNA:   3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 34751 0.68 0.92289
Target:  5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3'
miRNA:   3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 121251 0.67 0.951641
Target:  5'- gGCCCAuGuuuAGACGCcacGUCGAGCGgUUCc -3'
miRNA:   3'- -CGGGU-Cu--UUUGCG---CAGCUCGUgGAGc -5'
24377 3' -53.8 NC_005264.1 + 146204 0.67 0.95561
Target:  5'- cGCaCCAGAGacgcacucGACGUGUCGAuCGCCg-- -3'
miRNA:   3'- -CG-GGUCUU--------UUGCGCAGCUcGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 8379 0.66 0.96287
Target:  5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3'
miRNA:   3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5'
24377 3' -53.8 NC_005264.1 + 94342 0.66 0.966171
Target:  5'- cCCCAGAAAGC-CGUCGccGCguucgaucuaaACCUCa -3'
miRNA:   3'- cGGGUCUUUUGcGCAGCu-CG-----------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 113195 0.72 0.759961
Target:  5'- aCCCGacGucCGgGUCGAGCACCUUGg -3'
miRNA:   3'- cGGGUcuUuuGCgCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 35783 0.71 0.806982
Target:  5'- --gCGGAGGGCGCGguggcgccgucguggCGGGCGCCUCu -3'
miRNA:   3'- cggGUCUUUUGCGCa--------------GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 85619 0.7 0.871298
Target:  5'- cGUCUuuAGGAAGCGCGcCGAGCcacuugguuAUCUCGg -3'
miRNA:   3'- -CGGG--UCUUUUGCGCaGCUCG---------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 68349 0.69 0.892375
Target:  5'- uGCCCAGAcguuGACGuCGUUGAGaaguCgCUCGg -3'
miRNA:   3'- -CGGGUCUu---UUGC-GCAGCUCgu--G-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.