miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 101034 0.67 0.947441
Target:  5'- uGCCCGGc-GAUGCccgcggcccgGUgGAGCugCUCGa -3'
miRNA:   3'- -CGGGUCuuUUGCG----------CAgCUCGugGAGC- -5'
24377 3' -53.8 NC_005264.1 + 9532 0.76 0.538262
Target:  5'- gGCCCucGAAcuuacucuucGACGCGUCGcccGCGCCUCGc -3'
miRNA:   3'- -CGGGu-CUU----------UUGCGCAGCu--CGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 41020 0.67 0.947441
Target:  5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3'
miRNA:   3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5'
24377 3' -53.8 NC_005264.1 + 25961 0.7 0.840212
Target:  5'- cGCCCAcuuuGAGCGCGucugcuUCGAuaACCUCGg -3'
miRNA:   3'- -CGGGUcu--UUUGCGC------AGCUcgUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 126626 1.12 0.003455
Target:  5'- aGCCCAGAAAACGCGUCGAGCACCUCGg -3'
miRNA:   3'- -CGGGUCUUUUGCGCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 47587 0.69 0.885573
Target:  5'- gGCUCGcGggGACGCGUUGGGgGagaCUCGc -3'
miRNA:   3'- -CGGGU-CuuUUGCGCAGCUCgUg--GAGC- -5'
24377 3' -53.8 NC_005264.1 + 97937 0.74 0.650094
Target:  5'- aGUCCAGAGcuuCGCGUCGAGguCAUCUCc -3'
miRNA:   3'- -CGGGUCUUuu-GCGCAGCUC--GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 33502 0.73 0.720954
Target:  5'- uGCUCAGu--GCGCGUCGcuGCGCC-CGg -3'
miRNA:   3'- -CGGGUCuuuUGCGCAGCu-CGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 36590 0.66 0.962184
Target:  5'- cGCCCAGGAugguauaaagauACGCcUUGAGCGCUccCGa -3'
miRNA:   3'- -CGGGUCUUu-----------UGCGcAGCUCGUGGa-GC- -5'
24377 3' -53.8 NC_005264.1 + 157036 0.71 0.788055
Target:  5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3'
miRNA:   3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 97656 0.7 0.840212
Target:  5'- uGCCguGAAAGCGCugacUCauGGCGCCUCGu -3'
miRNA:   3'- -CGGguCUUUUGCGc---AGc-UCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 158386 0.67 0.959351
Target:  5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3'
miRNA:   3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 126497 0.67 0.959351
Target:  5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3'
miRNA:   3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 76844 0.67 0.959351
Target:  5'- uGCCCAccGAGCGCGgcuuaguauaCGuGgACCUCGg -3'
miRNA:   3'- -CGGGUcuUUUGCGCa---------GCuCgUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 137287 0.67 0.951641
Target:  5'- cCCUGGAcGAGCGCGaCaAGCGCCUUGu -3'
miRNA:   3'- cGGGUCU-UUUGCGCaGcUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 77054 0.67 0.951641
Target:  5'- aCCCGGAAGAgGCGcgCGAGCuACUa-- -3'
miRNA:   3'- cGGGUCUUUUgCGCa-GCUCG-UGGagc -5'
24377 3' -53.8 NC_005264.1 + 38413 0.67 0.951641
Target:  5'- gGCCgCGGAGcACGCGcucugCGAGUuCCUUGu -3'
miRNA:   3'- -CGG-GUCUUuUGCGCa----GCUCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 109266 0.69 0.898948
Target:  5'- cGCC------ACGCGUCGGGCGCgUCGu -3'
miRNA:   3'- -CGGgucuuuUGCGCAGCUCGUGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 105558 0.7 0.85382
Target:  5'- aGCUCAGGAuacaauggagaccccCGCGggcuagggcUCGAGCGCCUCa -3'
miRNA:   3'- -CGGGUCUUuu-------------GCGC---------AGCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 45566 0.7 0.848285
Target:  5'- cGCCCGuGucGGCGCGcaCGAGUcCCUCGg -3'
miRNA:   3'- -CGGGU-CuuUUGCGCa-GCUCGuGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.