miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 162570 0.71 0.823503
Target:  5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3'
miRNA:   3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 157036 0.71 0.788055
Target:  5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3'
miRNA:   3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 13339 0.72 0.759961
Target:  5'- aGCCgaaGGGAAcgGCGCGaaUCGAGCGgCUCGa -3'
miRNA:   3'- -CGGg--UCUUU--UGCGC--AGCUCGUgGAGC- -5'
24377 3' -53.8 NC_005264.1 + 96280 0.72 0.740648
Target:  5'- cUCCAucguAGACGCGcUCGuGCGCCUCGg -3'
miRNA:   3'- cGGGUcu--UUUGCGC-AGCuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 38413 0.67 0.951641
Target:  5'- gGCCgCGGAGcACGCGcucugCGAGUuCCUUGu -3'
miRNA:   3'- -CGG-GUCUUuUGCGCa----GCUCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 77054 0.67 0.951641
Target:  5'- aCCCGGAAGAgGCGcgCGAGCuACUa-- -3'
miRNA:   3'- cGGGUCUUUUgCGCa-GCUCG-UGGagc -5'
24377 3' -53.8 NC_005264.1 + 137287 0.67 0.951641
Target:  5'- cCCUGGAcGAGCGCGaCaAGCGCCUUGu -3'
miRNA:   3'- cGGGUCU-UUUGCGCaGcUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 62458 0.66 0.975842
Target:  5'- gGCCCuAGAAcaagaaucgguguuGCGCGUCGuGCGcgcguCCUCu -3'
miRNA:   3'- -CGGG-UCUUu-------------UGCGCAGCuCGU-----GGAGc -5'
24377 3' -53.8 NC_005264.1 + 143854 0.66 0.975842
Target:  5'- cGCCCAuGAAGGCGCacgaagacucuauaaGUCG-GCGCggCGg -3'
miRNA:   3'- -CGGGU-CUUUUGCG---------------CAGCuCGUGgaGC- -5'
24377 3' -53.8 NC_005264.1 + 61987 0.66 0.974824
Target:  5'- cGCCUGGucccAUGCGUCGAGgGagaaCUCGc -3'
miRNA:   3'- -CGGGUCuuu-UGCGCAGCUCgUg---GAGC- -5'
24377 3' -53.8 NC_005264.1 + 13434 0.66 0.974824
Target:  5'- gGCCCAGucuACGCG-CGAGCGg---- -3'
miRNA:   3'- -CGGGUCuuuUGCGCaGCUCGUggagc -5'
24377 3' -53.8 NC_005264.1 + 5021 0.66 0.974564
Target:  5'- uGCgCAGAGGAggccacgagguucCGCGUCGugGGCGCCg-- -3'
miRNA:   3'- -CGgGUCUUUU-------------GCGCAGC--UCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 146520 0.66 0.97404
Target:  5'- uUCCAGAGcuACGCGUCGAgaguGCggcgcacauccccaGCCUCu -3'
miRNA:   3'- cGGGUCUUu-UGCGCAGCU----CG--------------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 104210 0.66 0.972142
Target:  5'- cGCCgCAGAGcACGCGUCGcacGGguCaUCGg -3'
miRNA:   3'- -CGG-GUCUUuUGCGCAGC---UCguGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 65118 0.66 0.972142
Target:  5'- cUCCGGuGAACGCGaCGccaAGC-CCUCGg -3'
miRNA:   3'- cGGGUCuUUUGCGCaGC---UCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 36163 0.66 0.972142
Target:  5'- aGCUCGGGAAGCGCGaCGGGacgaUCGc -3'
miRNA:   3'- -CGGGUCUUUUGCGCaGCUCguggAGC- -5'
24377 3' -53.8 NC_005264.1 + 30809 0.67 0.959713
Target:  5'- gGCCCAGAcagGAGuCGCGUCccuaaaacguaaucuGGCGCCggUCGg -3'
miRNA:   3'- -CGGGUCU---UUU-GCGCAGc--------------UCGUGG--AGC- -5'
24377 3' -53.8 NC_005264.1 + 158386 0.67 0.959351
Target:  5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3'
miRNA:   3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 126497 0.67 0.959351
Target:  5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3'
miRNA:   3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 76844 0.67 0.959351
Target:  5'- uGCCCAccGAGCGCGgcuuaguauaCGuGgACCUCGg -3'
miRNA:   3'- -CGGGUcuUUUGCGCa---------GCuCgUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.