Results 81 - 94 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 62458 | 0.66 | 0.975842 |
Target: 5'- gGCCCuAGAAcaagaaucgguguuGCGCGUCGuGCGcgcguCCUCu -3' miRNA: 3'- -CGGG-UCUUu-------------UGCGCAGCuCGU-----GGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 150605 | 0.66 | 0.96926 |
Target: 5'- gGCgCCAGAGGugGgG-CGAGuCugCUCu -3' miRNA: 3'- -CG-GGUCUUUugCgCaGCUC-GugGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 36163 | 0.66 | 0.972142 |
Target: 5'- aGCUCGGGAAGCGCGaCGGGacgaUCGc -3' miRNA: 3'- -CGGGUCUUUUGCGCaGCUCguggAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 59001 | 0.66 | 0.966171 |
Target: 5'- gGCCCAGAAGcuugGCGCucagcgaaUCGAGCGCa--- -3' miRNA: 3'- -CGGGUCUUU----UGCGc-------AGCUCGUGgagc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 77054 | 0.67 | 0.951641 |
Target: 5'- aCCCGGAAGAgGCGcgCGAGCuACUa-- -3' miRNA: 3'- cGGGUCUUUUgCGCa-GCUCG-UGGagc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 137287 | 0.67 | 0.951641 |
Target: 5'- cCCUGGAcGAGCGCGaCaAGCGCCUUGu -3' miRNA: 3'- cGGGUCU-UUUGCGCaGcUCGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 76844 | 0.67 | 0.959351 |
Target: 5'- uGCCCAccGAGCGCGgcuuaguauaCGuGgACCUCGg -3' miRNA: 3'- -CGGGUcuUUUGCGCa---------GCuCgUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 126497 | 0.67 | 0.959351 |
Target: 5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3' miRNA: 3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 158386 | 0.67 | 0.959351 |
Target: 5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3' miRNA: 3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 30809 | 0.67 | 0.959713 |
Target: 5'- gGCCCAGAcagGAGuCGCGUCccuaaaacguaaucuGGCGCCggUCGg -3' miRNA: 3'- -CGGGUCU---UUU-GCGCAGc--------------UCGUGG--AGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 36590 | 0.66 | 0.962184 |
Target: 5'- cGCCCAGGAugguauaaagauACGCcUUGAGCGCUccCGa -3' miRNA: 3'- -CGGGUCUUu-----------UGCGcAGCUCGUGGa-GC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 127406 | 0.66 | 0.96287 |
Target: 5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3' miRNA: 3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 153137 | 0.66 | 0.96287 |
Target: 5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3' miRNA: 3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 103507 | 0.65 | 0.976586 |
Target: 5'- cGCgaCAGGcuguucauguacauGGACGUGUCGAGCGCUa-- -3' miRNA: 3'- -CGg-GUCU--------------UUUGCGCAGCUCGUGGagc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home