miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 5' -58.4 NC_005264.1 + 62016 0.71 0.59867
Target:  5'- cGCcGUCGUCCCuGUCGCGCUcuagcaaggUUCgGAg -3'
miRNA:   3'- aCGcUAGCAGGG-CAGCGCGA---------AGGgCU- -5'
24377 5' -58.4 NC_005264.1 + 48859 0.66 0.864133
Target:  5'- cGCGGUCGUgUCGUCGCuuCUgacgCgCCGGg -3'
miRNA:   3'- aCGCUAGCAgGGCAGCGc-GAa---G-GGCU- -5'
24377 5' -58.4 NC_005264.1 + 103081 0.66 0.856721
Target:  5'- cGCGAagCGUCCgCGUCGCaGCcgccgCCCc- -3'
miRNA:   3'- aCGCUa-GCAGG-GCAGCG-CGaa---GGGcu -5'
24377 5' -58.4 NC_005264.1 + 3242 0.66 0.848347
Target:  5'- gUGCGcauguccGUCG-CUCGUCuCGCUUCUCGGu -3'
miRNA:   3'- -ACGC-------UAGCaGGGCAGcGCGAAGGGCU- -5'
24377 5' -58.4 NC_005264.1 + 53205 0.66 0.825222
Target:  5'- cGCGAgUUGcaaCCGUCGCGCccCCCGc -3'
miRNA:   3'- aCGCU-AGCag-GGCAGCGCGaaGGGCu -5'
24377 5' -58.4 NC_005264.1 + 100584 0.67 0.816078
Target:  5'- aGCGccGUCGUuguacagCCUGUgGCgGCUUCCCGu -3'
miRNA:   3'- aCGC--UAGCA-------GGGCAgCG-CGAAGGGCu -5'
24377 5' -58.4 NC_005264.1 + 34451 0.67 0.791088
Target:  5'- gGCGAucaagcUCGUCCCGcacuauuugcgCGCGCUUCagGAg -3'
miRNA:   3'- aCGCU------AGCAGGGCa----------GCGCGAAGggCU- -5'
24377 5' -58.4 NC_005264.1 + 63849 0.67 0.788435
Target:  5'- cGCGGUCGUUUCGUCaggcCGCUcacaacggccgucuUCUCGAg -3'
miRNA:   3'- aCGCUAGCAGGGCAGc---GCGA--------------AGGGCU- -5'
24377 5' -58.4 NC_005264.1 + 149248 0.68 0.754802
Target:  5'- cGCGAUCGccggUCCCGUCuucguuccGCcCUUCCCc- -3'
miRNA:   3'- aCGCUAGC----AGGGCAG--------CGcGAAGGGcu -5'
24377 5' -58.4 NC_005264.1 + 75254 0.69 0.66704
Target:  5'- cGCGAccacgcgccguguUCGUCCuCGUCgGCGCUUugcuggUCCGAu -3'
miRNA:   3'- aCGCU-------------AGCAGG-GCAG-CGCGAA------GGGCU- -5'
24377 5' -58.4 NC_005264.1 + 125167 0.69 0.697491
Target:  5'- gGCGAgggccgCGcgCCCGUCGCGCaUCgCGu -3'
miRNA:   3'- aCGCUa-----GCa-GGGCAGCGCGaAGgGCu -5'
24377 5' -58.4 NC_005264.1 + 113475 0.69 0.697491
Target:  5'- cGCGGUCGUgCCacgGUCGCGCgagUgCCa- -3'
miRNA:   3'- aCGCUAGCAgGG---CAGCGCGa--AgGGcu -5'
24377 5' -58.4 NC_005264.1 + 161699 0.68 0.736016
Target:  5'- gGCcgGAUCGUCCCGU-GCGCccgUCCGu -3'
miRNA:   3'- aCG--CUAGCAGGGCAgCGCGaa-GGGCu -5'
24377 5' -58.4 NC_005264.1 + 6930 0.68 0.736016
Target:  5'- cGCGAUUGUCUugagcuaauaCGUCGCGCcgCaCCGu -3'
miRNA:   3'- aCGCUAGCAGG----------GCAGCGCGaaG-GGCu -5'
24377 5' -58.4 NC_005264.1 + 53722 0.68 0.736016
Target:  5'- gGCGAacgagucCGUCUCGUCGUGCccgUCuCCGGc -3'
miRNA:   3'- aCGCUa------GCAGGGCAGCGCGa--AG-GGCU- -5'
24377 5' -58.4 NC_005264.1 + 126672 1.09 0.002227
Target:  5'- uUGCGAUCGUCCCGUCGCGCUUCCCGAg -3'
miRNA:   3'- -ACGCUAGCAGGGCAGCGCGAAGGGCU- -5'
24377 5' -58.4 NC_005264.1 + 143752 0.67 0.794606
Target:  5'- cGCGGUgcaGUCCUggcucccuaugcgcgGgaagCGCGCUUCCCGc -3'
miRNA:   3'- aCGCUAg--CAGGG---------------Ca---GCGCGAAGGGCu -5'
24377 5' -58.4 NC_005264.1 + 115290 0.67 0.782198
Target:  5'- cGCGAcaacgaCGUCCCG-CGCagccCUUCCUGAc -3'
miRNA:   3'- aCGCUa-----GCAGGGCaGCGc---GAAGGGCU- -5'
24377 5' -58.4 NC_005264.1 + 27780 0.67 0.782198
Target:  5'- gGCGAgaaauucgUCGUCCCGUUGUaGUUUUgCGGa -3'
miRNA:   3'- aCGCU--------AGCAGGGCAGCG-CGAAGgGCU- -5'
24377 5' -58.4 NC_005264.1 + 44933 0.67 0.773182
Target:  5'- aGCGAaccgCGggCCCGUUGCGCgcgugacUCCCu- -3'
miRNA:   3'- aCGCUa---GCa-GGGCAGCGCGa------AGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.