Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24377 | 5' | -58.4 | NC_005264.1 | + | 125167 | 0.69 | 0.697491 |
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Target: 5'- gGCGAgggccgCGcgCCCGUCGCGCaUCgCGu -3' miRNA: 3'- aCGCUa-----GCa-GGGCAGCGCGaAGgGCu -5' |
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| 24377 | 5' | -58.4 | NC_005264.1 | + | 113475 | 0.69 | 0.697491 |
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Target: 5'- cGCGGUCGUgCCacgGUCGCGCgagUgCCa- -3' miRNA: 3'- aCGCUAGCAgGG---CAGCGCGa--AgGGcu -5' |
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| 24377 | 5' | -58.4 | NC_005264.1 | + | 6140 | 0.69 | 0.697491 |
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Target: 5'- gGCGAgggccgCGcgCCCGUCGCGCaUCgCGu -3' miRNA: 3'- aCGCUa-----GCa-GGGCAGCGCGaAGgGCu -5' |
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| 24377 | 5' | -58.4 | NC_005264.1 | + | 75254 | 0.69 | 0.66704 |
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Target: 5'- cGCGAccacgcgccguguUCGUCCuCGUCgGCGCUUugcuggUCCGAu -3' miRNA: 3'- aCGCU-------------AGCAGG-GCAG-CGCGAA------GGGCU- -5' |
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| 24377 | 5' | -58.4 | NC_005264.1 | + | 62016 | 0.71 | 0.59867 |
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Target: 5'- cGCcGUCGUCCCuGUCGCGCUcuagcaaggUUCgGAg -3' miRNA: 3'- aCGcUAGCAGGG-CAGCGCGA---------AGGgCU- -5' |
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| 24377 | 5' | -58.4 | NC_005264.1 | + | 134868 | 0.72 | 0.501986 |
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Target: 5'- gGCGGUCGUCgUcaCGCGUUUCCCa- -3' miRNA: 3'- aCGCUAGCAGgGcaGCGCGAAGGGcu -5' |
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| 24377 | 5' | -58.4 | NC_005264.1 | + | 48538 | 0.73 | 0.43852 |
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Target: 5'- cGCG-UCGUCCCG-CGCGCc-CCCGu -3' miRNA: 3'- aCGCuAGCAGGGCaGCGCGaaGGGCu -5' |
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| 24377 | 5' | -58.4 | NC_005264.1 | + | 77358 | 0.75 | 0.364137 |
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Target: 5'- gGCGAUCuccGUCCCGUCuaGCGCgucgCCCGu -3' miRNA: 3'- aCGCUAG---CAGGGCAG--CGCGaa--GGGCu -5' |
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| 24377 | 5' | -58.4 | NC_005264.1 | + | 126672 | 1.09 | 0.002227 |
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Target: 5'- uUGCGAUCGUCCCGUCGCGCUUCCCGAg -3' miRNA: 3'- -ACGCUAGCAGGGCAGCGCGAAGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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