miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 6414 0.67 0.831582
Target:  5'- gGCGAucacCGCCGCCa-GCCGCagGCa- -3'
miRNA:   3'- -UGCUuuu-GCGGCGGaaCGGCGa-CGag -5'
24378 3' -56.1 NC_005264.1 + 160218 0.67 0.848004
Target:  5'- -aGAAGACuCCGCCccGCCuGCUcgGCUCg -3'
miRNA:   3'- ugCUUUUGcGGCGGaaCGG-CGA--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 23697 0.67 0.842344
Target:  5'- uGCGGGAACGCCgaccgacccucaacGCCcaaagggcacacGCCGCcGCUCa -3'
miRNA:   3'- -UGCUUUUGCGG--------------CGGaa----------CGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 58019 0.67 0.839889
Target:  5'- gGCGGAcAgGCCGUCgUGCgGCgcccGCUCg -3'
miRNA:   3'- -UGCUUuUgCGGCGGaACGgCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 131236 0.67 0.831582
Target:  5'- gGCGAugcGCGCCGCCUcGCCagagaGCaGaCUCg -3'
miRNA:   3'- -UGCUuu-UGCGGCGGAaCGG-----CGaC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 57193 0.67 0.871134
Target:  5'- gGC-AAAGCGCCGCCcgUGCCauuaUUGCUa -3'
miRNA:   3'- -UGcUUUUGCGGCGGa-ACGGc---GACGAg -5'
24378 3' -56.1 NC_005264.1 + 64293 0.68 0.787456
Target:  5'- cCGAGuauCGCgGCCcacagcgcgUUGCCGCUGC-Ca -3'
miRNA:   3'- uGCUUuu-GCGgCGG---------AACGGCGACGaG- -5'
24378 3' -56.1 NC_005264.1 + 158228 0.68 0.814426
Target:  5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3'
miRNA:   3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 155776 0.68 0.823092
Target:  5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 132599 0.68 0.814426
Target:  5'- aGCGu-GGCaCCGCUUUGCCGC-GCUg -3'
miRNA:   3'- -UGCuuUUGcGGCGGAACGGCGaCGAg -5'
24378 3' -56.1 NC_005264.1 + 124172 0.68 0.814426
Target:  5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3'
miRNA:   3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5'
24378 3' -56.1 NC_005264.1 + 126087 0.68 0.805592
Target:  5'- gGCGAcgGCGCCgGCCggcGCCGUcGCg- -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 103894 0.68 0.814426
Target:  5'- -gGAAGACGCCGUcaaCUUGC-GCagGCUCc -3'
miRNA:   3'- ugCUUUUGCGGCG---GAACGgCGa-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 105763 0.68 0.814426
Target:  5'- gACGAAGAUG-CGCCc-GCCGCUgacgaggacGCUCu -3'
miRNA:   3'- -UGCUUUUGCgGCGGaaCGGCGA---------CGAG- -5'
24378 3' -56.1 NC_005264.1 + 36750 0.68 0.823092
Target:  5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 5145 0.68 0.814426
Target:  5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3'
miRNA:   3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5'
24378 3' -56.1 NC_005264.1 + 43326 0.68 0.778171
Target:  5'- cGCGAGGGCuGCCGCCUcggagcacGCC-CUGCg- -3'
miRNA:   3'- -UGCUUUUG-CGGCGGAa-------CGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 80658 0.68 0.778171
Target:  5'- uACGAugGcCGCCGCCgaccgGCCGCacgGCa- -3'
miRNA:   3'- -UGCUuuU-GCGGCGGaa---CGGCGa--CGag -5'
24378 3' -56.1 NC_005264.1 + 40795 0.68 0.796599
Target:  5'- cCGAGAGCggaGCCG-CUUGCCGCggGgUCg -3'
miRNA:   3'- uGCUUUUG---CGGCgGAACGGCGa-CgAG- -5'
24378 3' -56.1 NC_005264.1 + 39201 0.68 0.814426
Target:  5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3'
miRNA:   3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.