miRNA display CGI


Results 81 - 100 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 40795 0.68 0.796599
Target:  5'- cCGAGAGCggaGCCG-CUUGCCGCggGgUCg -3'
miRNA:   3'- uGCUUUUG---CGGCgGAACGGCGa-CgAG- -5'
24378 3' -56.1 NC_005264.1 + 126087 0.68 0.805592
Target:  5'- gGCGAcgGCGCCgGCCggcGCCGUcGCg- -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 124172 0.68 0.814426
Target:  5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3'
miRNA:   3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5'
24378 3' -56.1 NC_005264.1 + 158228 0.68 0.814426
Target:  5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3'
miRNA:   3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 155776 0.68 0.823092
Target:  5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 50487 0.69 0.749559
Target:  5'- gAUGAGGACGUgGCCacgGCCGCgGC-Ca -3'
miRNA:   3'- -UGCUUUUGCGgCGGaa-CGGCGaCGaG- -5'
24378 3' -56.1 NC_005264.1 + 100373 0.69 0.7398
Target:  5'- cAUGggGcaAUGCUGCggaUGCCGCUGCUg -3'
miRNA:   3'- -UGCuuU--UGCGGCGga-ACGGCGACGAg -5'
24378 3' -56.1 NC_005264.1 + 121861 0.69 0.746641
Target:  5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3'
miRNA:   3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 156146 0.69 0.749559
Target:  5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3'
miRNA:   3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5'
24378 3' -56.1 NC_005264.1 + 7570 0.69 0.749559
Target:  5'- uCGucccCGCCGCCUaccccgcGCCGCUGCg- -3'
miRNA:   3'- uGCuuuuGCGGCGGAa------CGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 156886 0.69 0.729946
Target:  5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3'
miRNA:   3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 16068 0.69 0.729946
Target:  5'- cCGAGAAcCGCCGCgcggcgCUUGCUGUUGC-Cg -3'
miRNA:   3'- uGCUUUU-GCGGCG------GAACGGCGACGaG- -5'
24378 3' -56.1 NC_005264.1 + 37860 0.69 0.729946
Target:  5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3'
miRNA:   3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 2835 0.69 0.746641
Target:  5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3'
miRNA:   3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 37119 0.69 0.749559
Target:  5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3'
miRNA:   3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5'
24378 3' -56.1 NC_005264.1 + 46414 0.69 0.749559
Target:  5'- cGCGGccAGACGCCcCCagcgaccUGCCGCggGCUCa -3'
miRNA:   3'- -UGCU--UUUGCGGcGGa------ACGGCGa-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 141997 0.69 0.759213
Target:  5'- cGCGc-AGCGCCGUCguaUGCCGCgGCa- -3'
miRNA:   3'- -UGCuuUUGCGGCGGa--ACGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 2984 0.69 0.748587
Target:  5'- cACGAauccaucGAGCGCCGaCUggGCCGgCgGCUCg -3'
miRNA:   3'- -UGCU-------UUUGCGGC-GGaaCGGC-GaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 95823 0.69 0.763044
Target:  5'- uGCGcAAGGcCGCCGCuccguccaggcagcaCUcGCCGUUGCUCg -3'
miRNA:   3'- -UGC-UUUU-GCGGCG---------------GAaCGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 153335 0.7 0.720006
Target:  5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3'
miRNA:   3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.