Results 61 - 80 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 58019 | 0.67 | 0.839889 |
Target: 5'- gGCGGAcAgGCCGUCgUGCgGCgcccGCUCg -3' miRNA: 3'- -UGCUUuUgCGGCGGaACGgCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 12209 | 0.67 | 0.831582 |
Target: 5'- gGCGAugcGCGCCGCCUcGCCagagaGCaGaCUCg -3' miRNA: 3'- -UGCUuu-UGCGGCGGAaCGG-----CGaC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 6414 | 0.67 | 0.831582 |
Target: 5'- gGCGAucacCGCCGCCa-GCCGCagGCa- -3' miRNA: 3'- -UGCUuuu-GCGGCGGaaCGGCGa-CGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 81405 | 0.67 | 0.831582 |
Target: 5'- uGCGGGugcGCGCCG-CUUGgUGCUcGCUCu -3' miRNA: 3'- -UGCUUu--UGCGGCgGAACgGCGA-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 131236 | 0.67 | 0.831582 |
Target: 5'- gGCGAugcGCGCCGCCUcGCCagagaGCaGaCUCg -3' miRNA: 3'- -UGCUuu-UGCGGCGGAaCGG-----CGaC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 155475 | 0.67 | 0.830742 |
Target: 5'- aAUGAAAACcgcggcgGCCGCCagauuUUGCCGgUGCg- -3' miRNA: 3'- -UGCUUUUG-------CGGCGG-----AACGGCgACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 155776 | 0.68 | 0.823092 |
Target: 5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3' miRNA: 3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 36750 | 0.68 | 0.823092 |
Target: 5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3' miRNA: 3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 124172 | 0.68 | 0.814426 |
Target: 5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3' miRNA: 3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 105763 | 0.68 | 0.814426 |
Target: 5'- gACGAAGAUG-CGCCc-GCCGCUgacgaggacGCUCu -3' miRNA: 3'- -UGCUUUUGCgGCGGaaCGGCGA---------CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 39201 | 0.68 | 0.814426 |
Target: 5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3' miRNA: 3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 132599 | 0.68 | 0.814426 |
Target: 5'- aGCGu-GGCaCCGCUUUGCCGC-GCUg -3' miRNA: 3'- -UGCuuUUGcGGCGGAACGGCGaCGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 5145 | 0.68 | 0.814426 |
Target: 5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3' miRNA: 3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 158228 | 0.68 | 0.814426 |
Target: 5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3' miRNA: 3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 103894 | 0.68 | 0.814426 |
Target: 5'- -gGAAGACGCCGUcaaCUUGC-GCagGCUCc -3' miRNA: 3'- ugCUUUUGCGGCG---GAACGgCGa-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 7060 | 0.68 | 0.805592 |
Target: 5'- gGCGAcgGCGCCgGCCggcGCCGUcGCg- -3' miRNA: 3'- -UGCUuuUGCGG-CGGaa-CGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 145480 | 0.68 | 0.805592 |
Target: 5'- -aGAccGCGCCGCCgccagcUGCCGCggaagGCa- -3' miRNA: 3'- ugCUuuUGCGGCGGa-----ACGGCGa----CGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 126087 | 0.68 | 0.805592 |
Target: 5'- gGCGAcgGCGCCgGCCggcGCCGUcGCg- -3' miRNA: 3'- -UGCUuuUGCGG-CGGaa-CGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 69966 | 0.68 | 0.796599 |
Target: 5'- -gGAAGACGCUaCCUUgGCgGCUGCg- -3' miRNA: 3'- ugCUUUUGCGGcGGAA-CGgCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 40795 | 0.68 | 0.796599 |
Target: 5'- cCGAGAGCggaGCCG-CUUGCCGCggGgUCg -3' miRNA: 3'- uGCUUUUG---CGGCgGAACGGCGa-CgAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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