miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 63250 0.67 0.863633
Target:  5'- uCG-AAGCGCCcaGCa-UGCCGCUGCg- -3'
miRNA:   3'- uGCuUUUGCGG--CGgaACGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 64293 0.68 0.787456
Target:  5'- cCGAGuauCGCgGCCcacagcgcgUUGCCGCUGC-Ca -3'
miRNA:   3'- uGCUUuu-GCGgCGG---------AACGGCGACGaG- -5'
24378 3' -56.1 NC_005264.1 + 64430 0.66 0.878417
Target:  5'- cACGgcGAUGaCGUC-UGCCGCgGCUCu -3'
miRNA:   3'- -UGCuuUUGCgGCGGaACGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 64799 0.67 0.848004
Target:  5'- aACGAGu-UGCCGUUaaUUGCCGCgagGCUg -3'
miRNA:   3'- -UGCUUuuGCGGCGG--AACGGCGa--CGAg -5'
24378 3' -56.1 NC_005264.1 + 68803 0.66 0.905284
Target:  5'- gUGAGcACGaCCGCgUUGCCGaaCUGCgUCa -3'
miRNA:   3'- uGCUUuUGC-GGCGgAACGGC--GACG-AG- -5'
24378 3' -56.1 NC_005264.1 + 69603 0.66 0.905284
Target:  5'- gACGAGGGCGCCGCCcggcgUGagaaCGacagGCUa -3'
miRNA:   3'- -UGCUUUUGCGGCGGa----ACg---GCga--CGAg -5'
24378 3' -56.1 NC_005264.1 + 69821 0.77 0.339907
Target:  5'- cGCGGAcGACGCCGCCggggugaagGCCGCccUGCUUg -3'
miRNA:   3'- -UGCUU-UUGCGGCGGaa-------CGGCG--ACGAG- -5'
24378 3' -56.1 NC_005264.1 + 69966 0.68 0.796599
Target:  5'- -gGAAGACGCUaCCUUgGCgGCUGCg- -3'
miRNA:   3'- ugCUUUUGCGGcGGAA-CGgCGACGag -5'
24378 3' -56.1 NC_005264.1 + 71336 0.66 0.892312
Target:  5'- cGCGGcauucuACGCCGCCgaaaccCCGCagcgGCUCu -3'
miRNA:   3'- -UGCUuu----UGCGGCGGaac---GGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 72126 0.66 0.878417
Target:  5'- -aGGGAGCGCCGCC-UGCCGg----- -3'
miRNA:   3'- ugCUUUUGCGGCGGaACGGCgacgag -5'
24378 3' -56.1 NC_005264.1 + 76062 0.67 0.839889
Target:  5'- uGCaGAGACGCCGCgacGCCGCgagcgucgacgGCUCu -3'
miRNA:   3'- -UGcUUUUGCGGCGgaaCGGCGa----------CGAG- -5'
24378 3' -56.1 NC_005264.1 + 79308 0.67 0.868906
Target:  5'- uGCGggGucaugucgcuCGCCGCaUUUGCgugcguagcgugcgCGCUGCUCu -3'
miRNA:   3'- -UGCuuUu---------GCGGCG-GAACG--------------GCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 80658 0.68 0.778171
Target:  5'- uACGAugGcCGCCGCCgaccgGCCGCacgGCa- -3'
miRNA:   3'- -UGCUuuU-GCGGCGGaa---CGGCGa--CGag -5'
24378 3' -56.1 NC_005264.1 + 81405 0.67 0.831582
Target:  5'- uGCGGGugcGCGCCG-CUUGgUGCUcGCUCu -3'
miRNA:   3'- -UGCUUu--UGCGGCgGAACgGCGA-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 83710 0.71 0.637483
Target:  5'- cACGGAGaaggggcaagcgcACGCCGCCgUGCCGa-GCUUa -3'
miRNA:   3'- -UGCUUU-------------UGCGGCGGaACGGCgaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 84824 0.7 0.699907
Target:  5'- aGCGAAGcuCGCCGUCaUGCaCGCaauucUGCUCg -3'
miRNA:   3'- -UGCUUUu-GCGGCGGaACG-GCG-----ACGAG- -5'
24378 3' -56.1 NC_005264.1 + 85613 0.74 0.487564
Target:  5'- -gGAAAGCuCCGCCgaUGCCGUUGCUg -3'
miRNA:   3'- ugCUUUUGcGGCGGa-ACGGCGACGAg -5'
24378 3' -56.1 NC_005264.1 + 86802 0.67 0.855921
Target:  5'- aACGggGACauuCCGC--UGCCGCUGUg- -3'
miRNA:   3'- -UGCuuUUGc--GGCGgaACGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 94112 0.67 0.871134
Target:  5'- cCGAGguucuGGCGCCGCUggUGgaaagguacCCGCUGCUg -3'
miRNA:   3'- uGCUU-----UUGCGGCGGa-AC---------GGCGACGAg -5'
24378 3' -56.1 NC_005264.1 + 94724 0.71 0.628213
Target:  5'- cCGAguauGAGCG-CGCCUUGUCGCUGUa- -3'
miRNA:   3'- uGCU----UUUGCgGCGGAACGGCGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.