miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 121861 0.69 0.746641
Target:  5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3'
miRNA:   3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 118960 0.66 0.885478
Target:  5'- ----cGGCGCCcCCuUUGCCGC-GCUCg -3'
miRNA:   3'- ugcuuUUGCGGcGG-AACGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 117437 0.71 0.638513
Target:  5'- cGCGcAGGGCGCCGCCcuccaucguUUGCCGCgccuuCUCc -3'
miRNA:   3'- -UGC-UUUUGCGGCGG---------AACGGCGac---GAG- -5'
24378 3' -56.1 NC_005264.1 + 114339 0.71 0.638513
Target:  5'- aACGAAGAcauCGUCaGCCUUGCCGC-GCa- -3'
miRNA:   3'- -UGCUUUU---GCGG-CGGAACGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 113676 0.66 0.898915
Target:  5'- cCGAAAcuUGCCGCg--GCCGCUGUg- -3'
miRNA:   3'- uGCUUUu-GCGGCGgaaCGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 113487 0.66 0.905284
Target:  5'- -----cGCGCCGaUCUUGCCGC-GUUCc -3'
miRNA:   3'- ugcuuuUGCGGC-GGAACGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 107661 0.7 0.720006
Target:  5'- cGCGGu--CGCCGCCUUcaGCCGC-GCcCa -3'
miRNA:   3'- -UGCUuuuGCGGCGGAA--CGGCGaCGaG- -5'
24378 3' -56.1 NC_005264.1 + 105763 0.68 0.814426
Target:  5'- gACGAAGAUG-CGCCc-GCCGCUgacgaggacGCUCu -3'
miRNA:   3'- -UGCUUUUGCgGCGGaaCGGCGA---------CGAG- -5'
24378 3' -56.1 NC_005264.1 + 105532 0.75 0.422811
Target:  5'- uGCGGAuGCGaUCGCUgagUGCCGCUaGCUCa -3'
miRNA:   3'- -UGCUUuUGC-GGCGGa--ACGGCGA-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 104963 0.73 0.516722
Target:  5'- cGCGccAugGCCGCCggUGCCGCcGuCUCu -3'
miRNA:   3'- -UGCuuUugCGGCGGa-ACGGCGaC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 104339 0.66 0.892312
Target:  5'- cCGAGGACGCaccgCGCuCUUGCgCGCaUGCg- -3'
miRNA:   3'- uGCUUUUGCG----GCG-GAACG-GCG-ACGag -5'
24378 3' -56.1 NC_005264.1 + 104328 0.66 0.885478
Target:  5'- gGCGc-GACGCCGCUUacgaggaggUGCCGCUcagGCg- -3'
miRNA:   3'- -UGCuuUUGCGGCGGA---------ACGGCGA---CGag -5'
24378 3' -56.1 NC_005264.1 + 103894 0.68 0.814426
Target:  5'- -gGAAGACGCCGUcaaCUUGC-GCagGCUCc -3'
miRNA:   3'- ugCUUUUGCGGCG---GAACGgCGa-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 101039 0.67 0.863633
Target:  5'- gGCGAugccCGCgGCCcggUGgaGCUGCUCg -3'
miRNA:   3'- -UGCUuuu-GCGgCGGa--ACggCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 100373 0.69 0.7398
Target:  5'- cAUGggGcaAUGCUGCggaUGCCGCUGCUg -3'
miRNA:   3'- -UGCuuU--UGCGGCGga-ACGGCGACGAg -5'
24378 3' -56.1 NC_005264.1 + 97685 0.68 0.787456
Target:  5'- -aGAGGGCGCCGCCgcGgUGUUGgUCa -3'
miRNA:   3'- ugCUUUUGCGGCGGaaCgGCGACgAG- -5'
24378 3' -56.1 NC_005264.1 + 97239 0.66 0.881268
Target:  5'- cGCGAAcgcagcagcaagauGugGCCGCCgggccuuggcacggUagugGCCGCUGcCUCg -3'
miRNA:   3'- -UGCUU--------------UugCGGCGG--------------Aa---CGGCGAC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 95823 0.69 0.763044
Target:  5'- uGCGcAAGGcCGCCGCuccguccaggcagcaCUcGCCGUUGCUCg -3'
miRNA:   3'- -UGC-UUUU-GCGGCG---------------GAaCGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 95321 0.67 0.863633
Target:  5'- cAUGGAGAuugcCGCCGCCgggcGCCGCgaaacgGaCUCg -3'
miRNA:   3'- -UGCUUUU----GCGGCGGaa--CGGCGa-----C-GAG- -5'
24378 3' -56.1 NC_005264.1 + 94724 0.71 0.628213
Target:  5'- cCGAguauGAGCG-CGCCUUGUCGCUGUa- -3'
miRNA:   3'- uGCU----UUUGCgGCGGAACGGCGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.