Results 101 - 120 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 38351 | 0.73 | 0.526598 |
Target: 5'- gGCGGAGGCuGCCGCUUUuucucGCCGCUuccgcaccucGCUCu -3' miRNA: 3'- -UGCUUUUG-CGGCGGAA-----CGGCGA----------CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 38094 | 0.67 | 0.861341 |
Target: 5'- aACGGAGAgaggauuuguuuucCGCCGCCaggcgUUGcCCGCgcGCUCu -3' miRNA: 3'- -UGCUUUU--------------GCGGCGG-----AAC-GGCGa-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 37860 | 0.69 | 0.729946 |
Target: 5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3' miRNA: 3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 37119 | 0.69 | 0.749559 |
Target: 5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3' miRNA: 3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 36750 | 0.68 | 0.823092 |
Target: 5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3' miRNA: 3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 34308 | 0.7 | 0.720006 |
Target: 5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3' miRNA: 3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 33903 | 0.82 | 0.164169 |
Target: 5'- cGCGAGAuaGCGCCGCCUuucUGCCGCcagGCUg -3' miRNA: 3'- -UGCUUU--UGCGGCGGA---ACGGCGa--CGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 33235 | 0.7 | 0.689766 |
Target: 5'- uCGAGAAgcuuCGCCGCCgcGCCGCaGCg- -3' miRNA: 3'- uGCUUUU----GCGGCGGaaCGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 31875 | 0.72 | 0.607631 |
Target: 5'- cGCGGucGGCGCaCGCCUUGUCGaUGCUg -3' miRNA: 3'- -UGCUu-UUGCG-GCGGAACGGCgACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 31459 | 0.66 | 0.905284 |
Target: 5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3' miRNA: 3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 31027 | 0.71 | 0.638513 |
Target: 5'- gGCGAcgGUGCCGCCUagcggucgUGCgGCUGCg- -3' miRNA: 3'- -UGCUuuUGCGGCGGA--------ACGgCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 27981 | 0.66 | 0.905284 |
Target: 5'- gUGAcGACGaCCGCCguaGCCGCgGCcCa -3' miRNA: 3'- uGCUuUUGC-GGCGGaa-CGGCGaCGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 24630 | 0.67 | 0.871134 |
Target: 5'- aGCGAcuGCgguugucguuugGCCGCCUUGUCuCUGCa- -3' miRNA: 3'- -UGCUuuUG------------CGGCGGAACGGcGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 23697 | 0.67 | 0.842344 |
Target: 5'- uGCGGGAACGCCgaccgacccucaacGCCcaaagggcacacGCCGCcGCUCa -3' miRNA: 3'- -UGCUUUUGCGG--------------CGGaa----------CGGCGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 23308 | 0.66 | 0.878417 |
Target: 5'- cGCGAu--CG-UGCCcaUGCUGCUGCUCc -3' miRNA: 3'- -UGCUuuuGCgGCGGa-ACGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 22137 | 0.67 | 0.862871 |
Target: 5'- aACGAGcgcGACGCgCGCCUUagauugcGCCGCggGC-Cg -3' miRNA: 3'- -UGCUU---UUGCG-GCGGAA-------CGGCGa-CGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 19521 | 0.7 | 0.679577 |
Target: 5'- gACGAGAAgcucgggacggcCGCCGCCaacgUUGCCGgaGCg- -3' miRNA: 3'- -UGCUUUU------------GCGGCGG----AACGGCgaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 17681 | 0.67 | 0.855921 |
Target: 5'- ---cAGGCGCaGCCgagGCCGCggcgGCUCg -3' miRNA: 3'- ugcuUUUGCGgCGGaa-CGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 17290 | 0.66 | 0.905908 |
Target: 5'- gGCGGAGG-GCUGCCcaucuaacugaaugGUCGCUGCUUc -3' miRNA: 3'- -UGCUUUUgCGGCGGaa------------CGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 16163 | 0.68 | 0.778171 |
Target: 5'- gGCGgcAAUGCCGCCcUGCgCGgaGgUCg -3' miRNA: 3'- -UGCuuUUGCGGCGGaACG-GCgaCgAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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