Results 41 - 60 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 85613 | 0.74 | 0.487564 |
Target: 5'- -gGAAAGCuCCGCCgaUGCCGUUGCUg -3' miRNA: 3'- ugCUUUUGcGGCGGa-ACGGCGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 126673 | 0.75 | 0.440795 |
Target: 5'- cACG-AAACGCCGCC-UGCCgGCUcggaggGCUCg -3' miRNA: 3'- -UGCuUUUGCGGCGGaACGG-CGA------CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 105532 | 0.75 | 0.422811 |
Target: 5'- uGCGGAuGCGaUCGCUgagUGCCGCUaGCUCa -3' miRNA: 3'- -UGCUUuUGC-GGCGGa--ACGGCGA-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 69821 | 0.77 | 0.339907 |
Target: 5'- cGCGGAcGACGCCGCCggggugaagGCCGCccUGCUUg -3' miRNA: 3'- -UGCUU-UUGCGGCGGaa-------CGGCG--ACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 138420 | 0.77 | 0.310208 |
Target: 5'- gGCGAGAACG-UGCUUUGCgucgCGCUGCUCg -3' miRNA: 3'- -UGCUUUUGCgGCGGAACG----GCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 59113 | 0.71 | 0.659089 |
Target: 5'- gGCGGc--CGCCGCCgcugaUGCCGCgccgccGCUCc -3' miRNA: 3'- -UGCUuuuGCGGCGGa----ACGGCGa-----CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 132225 | 0.7 | 0.669348 |
Target: 5'- cGCGGAuccguCGCCGCCgccgucGCCggGCUGCUUc -3' miRNA: 3'- -UGCUUuu---GCGGCGGaa----CGG--CGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 43326 | 0.68 | 0.778171 |
Target: 5'- cGCGAGGGCuGCCGCCUcggagcacGCC-CUGCg- -3' miRNA: 3'- -UGCUUUUG-CGGCGGAa-------CGGcGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 50487 | 0.69 | 0.749559 |
Target: 5'- gAUGAGGACGUgGCCacgGCCGCgGC-Ca -3' miRNA: 3'- -UGCUUUUGCGgCGGaa-CGGCGaCGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 156146 | 0.69 | 0.749559 |
Target: 5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3' miRNA: 3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 7570 | 0.69 | 0.749559 |
Target: 5'- uCGucccCGCCGCCUaccccgcGCCGCUGCg- -3' miRNA: 3'- uGCuuuuGCGGCGGAa------CGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 2984 | 0.69 | 0.748587 |
Target: 5'- cACGAauccaucGAGCGCCGaCUggGCCGgCgGCUCg -3' miRNA: 3'- -UGCU-------UUUGCGGC-GGaaCGGC-GaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 121861 | 0.69 | 0.746641 |
Target: 5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3' miRNA: 3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 100373 | 0.69 | 0.7398 |
Target: 5'- cAUGggGcaAUGCUGCggaUGCCGCUGCUg -3' miRNA: 3'- -UGCuuU--UGCGGCGga-ACGGCGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 156886 | 0.69 | 0.729946 |
Target: 5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3' miRNA: 3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 153335 | 0.7 | 0.720006 |
Target: 5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3' miRNA: 3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 127241 | 0.7 | 0.70999 |
Target: 5'- cACGGAGACGCgGCCaucggccgaaGCCGCagcaGCUCc -3' miRNA: 3'- -UGCUUUUGCGgCGGaa--------CGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 122767 | 0.7 | 0.699907 |
Target: 5'- gACGAGGAgcggggccucuUGCCGCCggGgCGCUGCg- -3' miRNA: 3'- -UGCUUUU-----------GCGGCGGaaCgGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 33235 | 0.7 | 0.689766 |
Target: 5'- uCGAGAAgcuuCGCCGCCgcGCCGCaGCg- -3' miRNA: 3'- uGCUUUU----GCGGCGGaaCGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 19521 | 0.7 | 0.679577 |
Target: 5'- gACGAGAAgcucgggacggcCGCCGCCaacgUUGCCGgaGCg- -3' miRNA: 3'- -UGCUUUU------------GCGGCGG----AACGGCgaCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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