miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 158228 0.68 0.814426
Target:  5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3'
miRNA:   3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 124172 0.68 0.814426
Target:  5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3'
miRNA:   3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5'
24378 3' -56.1 NC_005264.1 + 126087 0.68 0.805592
Target:  5'- gGCGAcgGCGCCgGCCggcGCCGUcGCg- -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 40795 0.68 0.796599
Target:  5'- cCGAGAGCggaGCCG-CUUGCCGCggGgUCg -3'
miRNA:   3'- uGCUUUUG---CGGCgGAACGGCGa-CgAG- -5'
24378 3' -56.1 NC_005264.1 + 64293 0.68 0.787456
Target:  5'- cCGAGuauCGCgGCCcacagcgcgUUGCCGCUGC-Ca -3'
miRNA:   3'- uGCUUuu-GCGgCGG---------AACGGCGACGaG- -5'
24378 3' -56.1 NC_005264.1 + 80658 0.68 0.778171
Target:  5'- uACGAugGcCGCCGCCgaccgGCCGCacgGCa- -3'
miRNA:   3'- -UGCUuuU-GCGGCGGaa---CGGCGa--CGag -5'
24378 3' -56.1 NC_005264.1 + 43326 0.68 0.778171
Target:  5'- cGCGAGGGCuGCCGCCUcggagcacGCC-CUGCg- -3'
miRNA:   3'- -UGCUUUUG-CGGCGGAa-------CGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 50487 0.69 0.749559
Target:  5'- gAUGAGGACGUgGCCacgGCCGCgGC-Ca -3'
miRNA:   3'- -UGCUUUUGCGgCGGaa-CGGCGaCGaG- -5'
24378 3' -56.1 NC_005264.1 + 153335 0.7 0.720006
Target:  5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3'
miRNA:   3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 156886 0.69 0.729946
Target:  5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3'
miRNA:   3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 100373 0.69 0.7398
Target:  5'- cAUGggGcaAUGCUGCggaUGCCGCUGCUg -3'
miRNA:   3'- -UGCuuU--UGCGGCGga-ACGGCGACGAg -5'
24378 3' -56.1 NC_005264.1 + 121861 0.69 0.746641
Target:  5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3'
miRNA:   3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 2984 0.69 0.748587
Target:  5'- cACGAauccaucGAGCGCCGaCUggGCCGgCgGCUCg -3'
miRNA:   3'- -UGCU-------UUUGCGGC-GGaaCGGC-GaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 7570 0.69 0.749559
Target:  5'- uCGucccCGCCGCCUaccccgcGCCGCUGCg- -3'
miRNA:   3'- uGCuuuuGCGGCGGAa------CGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 156146 0.69 0.749559
Target:  5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3'
miRNA:   3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5'
24378 3' -56.1 NC_005264.1 + 126359 1.08 0.003004
Target:  5'- cACGAAAACGCCGCCUUGCCGCUGCUCc -3'
miRNA:   3'- -UGCUUUUGCGGCGGAACGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 38384 0.66 0.905284
Target:  5'- gGCGAGAGCGgcgaCGCCgagacagaUGCCGCguacgcccUGCUg -3'
miRNA:   3'- -UGCUUUUGCg---GCGGa-------ACGGCG--------ACGAg -5'
24378 3' -56.1 NC_005264.1 + 31459 0.66 0.905284
Target:  5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3'
miRNA:   3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5'
24378 3' -56.1 NC_005264.1 + 113676 0.66 0.898915
Target:  5'- cCGAAAcuUGCCGCg--GCCGCUGUg- -3'
miRNA:   3'- uGCUUUu-GCGGCGgaaCGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 54912 0.66 0.898915
Target:  5'- cGCGAAGgucgcgGCGCUGCUggcgaacgGCUGCgagugGCUCc -3'
miRNA:   3'- -UGCUUU------UGCGGCGGaa------CGGCGa----CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.