Results 121 - 139 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 31459 | 0.66 | 0.905284 |
Target: 5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3' miRNA: 3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 38384 | 0.66 | 0.905284 |
Target: 5'- gGCGAGAGCGgcgaCGCCgagacagaUGCCGCguacgcccUGCUg -3' miRNA: 3'- -UGCUUUUGCg---GCGGa-------ACGGCG--------ACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 63250 | 0.67 | 0.863633 |
Target: 5'- uCG-AAGCGCCcaGCa-UGCCGCUGCg- -3' miRNA: 3'- uGCuUUUGCGG--CGgaACGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 38094 | 0.67 | 0.861341 |
Target: 5'- aACGGAGAgaggauuuguuuucCGCCGCCaggcgUUGcCCGCgcGCUCu -3' miRNA: 3'- -UGCUUUU--------------GCGGCGG-----AAC-GGCGa-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 132599 | 0.68 | 0.814426 |
Target: 5'- aGCGu-GGCaCCGCUUUGCCGC-GCUg -3' miRNA: 3'- -UGCuuUUGcGGCGGAACGGCGaCGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 39201 | 0.68 | 0.814426 |
Target: 5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3' miRNA: 3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 105763 | 0.68 | 0.814426 |
Target: 5'- gACGAAGAUG-CGCCc-GCCGCUgacgaggacGCUCu -3' miRNA: 3'- -UGCUUUUGCgGCGGaaCGGCGA---------CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 36750 | 0.68 | 0.823092 |
Target: 5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3' miRNA: 3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 155475 | 0.67 | 0.830742 |
Target: 5'- aAUGAAAACcgcggcgGCCGCCagauuUUGCCGgUGCg- -3' miRNA: 3'- -UGCUUUUG-------CGGCGG-----AACGGCgACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 81405 | 0.67 | 0.831582 |
Target: 5'- uGCGGGugcGCGCCG-CUUGgUGCUcGCUCu -3' miRNA: 3'- -UGCUUu--UGCGGCgGAACgGCGA-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 12209 | 0.67 | 0.831582 |
Target: 5'- gGCGAugcGCGCCGCCUcGCCagagaGCaGaCUCg -3' miRNA: 3'- -UGCUuu-UGCGGCGGAaCGG-----CGaC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 46940 | 0.67 | 0.839889 |
Target: 5'- uACGggGACGgguucccgacuCCGUCUaGCgGCUcGCUCa -3' miRNA: 3'- -UGCuuUUGC-----------GGCGGAaCGgCGA-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 159423 | 0.67 | 0.839889 |
Target: 5'- gUGggGcGCGCCGCCUUccaugGUCGUUccGCUCa -3' miRNA: 3'- uGCuuU-UGCGGCGGAA-----CGGCGA--CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 76062 | 0.67 | 0.839889 |
Target: 5'- uGCaGAGACGCCGCgacGCCGCgagcgucgacgGCUCu -3' miRNA: 3'- -UGcUUUUGCGGCGgaaCGGCGa----------CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 41191 | 0.67 | 0.848004 |
Target: 5'- -aGAAGACuCCGCCccGCCuGCUcgGCUCg -3' miRNA: 3'- ugCUUUUGcGGCGGaaCGG-CGA--CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 64799 | 0.67 | 0.848004 |
Target: 5'- aACGAGu-UGCCGUUaaUUGCCGCgagGCUg -3' miRNA: 3'- -UGCUUuuGCGGCGG--AACGGCGa--CGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 4618 | 0.67 | 0.848004 |
Target: 5'- gGCGuAGGCGCguucucgaaaauCGCCggGCCGCUuCUCg -3' miRNA: 3'- -UGCuUUUGCG------------GCGGaaCGGCGAcGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 10457 | 0.67 | 0.851195 |
Target: 5'- aGCGGAu-CGCCGCCgauagGCCGgaucccggucggaacCUGCUa -3' miRNA: 3'- -UGCUUuuGCGGCGGaa---CGGC---------------GACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 113487 | 0.66 | 0.905284 |
Target: 5'- -----cGCGCCGaUCUUGCCGC-GUUCc -3' miRNA: 3'- ugcuuuUGCGGC-GGAACGGCGaCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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