Results 41 - 60 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 7060 | 0.68 | 0.805592 |
Target: 5'- gGCGAcgGCGCCgGCCggcGCCGUcGCg- -3' miRNA: 3'- -UGCUuuUGCGG-CGGaa-CGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 10457 | 0.67 | 0.851195 |
Target: 5'- aGCGGAu-CGCCGCCgauagGCCGgaucccggucggaacCUGCUa -3' miRNA: 3'- -UGCUUuuGCGGCGGaa---CGGC---------------GACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 31459 | 0.66 | 0.905284 |
Target: 5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3' miRNA: 3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 5145 | 0.68 | 0.814426 |
Target: 5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3' miRNA: 3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 38384 | 0.66 | 0.905284 |
Target: 5'- gGCGAGAGCGgcgaCGCCgagacagaUGCCGCguacgcccUGCUg -3' miRNA: 3'- -UGCUUUUGCg---GCGGa-------ACGGCG--------ACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 11963 | 0.72 | 0.607631 |
Target: 5'- gACGAGGucGCGCCauGUCUUGCCGCgcgcgGCa- -3' miRNA: 3'- -UGCUUU--UGCGG--CGGAACGGCGa----CGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 54912 | 0.66 | 0.898915 |
Target: 5'- cGCGAAGgucgcgGCGCUGCUggcgaacgGCUGCgagugGCUCc -3' miRNA: 3'- -UGCUUU------UGCGGCGGaa------CGGCGa----CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 31027 | 0.71 | 0.638513 |
Target: 5'- gGCGAcgGUGCCGCCUagcggucgUGCgGCUGCg- -3' miRNA: 3'- -UGCUuuUGCGGCGGA--------ACGgCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 3741 | 0.7 | 0.699907 |
Target: 5'- gACGAGGAgcggggccucuUGCCGCCggGgCGCUGCg- -3' miRNA: 3'- -UGCUUUU-----------GCGGCGGaaCgGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 145825 | 0.7 | 0.720006 |
Target: 5'- gACGAu--CGCCGCCuUUGCCGUcccugagucUGUUUg -3' miRNA: 3'- -UGCUuuuGCGGCGG-AACGGCG---------ACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 2835 | 0.69 | 0.746641 |
Target: 5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3' miRNA: 3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 95823 | 0.69 | 0.763044 |
Target: 5'- uGCGcAAGGcCGCCGCuccguccaggcagcaCUcGCCGUUGCUCg -3' miRNA: 3'- -UGC-UUUU-GCGGCG---------------GAaCGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 69966 | 0.68 | 0.796599 |
Target: 5'- -gGAAGACGCUaCCUUgGCgGCUGCg- -3' miRNA: 3'- ugCUUUUGCGGcGGAA-CGgCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 39201 | 0.68 | 0.814426 |
Target: 5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3' miRNA: 3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 155475 | 0.67 | 0.830742 |
Target: 5'- aAUGAAAACcgcggcgGCCGCCagauuUUGCCGgUGCg- -3' miRNA: 3'- -UGCUUUUG-------CGGCGG-----AACGGCgACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 159423 | 0.67 | 0.839889 |
Target: 5'- gUGggGcGCGCCGCCUUccaugGUCGUUccGCUCa -3' miRNA: 3'- uGCuuU-UGCGGCGGAA-----CGGCGA--CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 64799 | 0.67 | 0.848004 |
Target: 5'- aACGAGu-UGCCGUUaaUUGCCGCgagGCUg -3' miRNA: 3'- -UGCUUuuGCGGCGG--AACGGCGa--CGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 135377 | 0.67 | 0.863633 |
Target: 5'- -aGAAAAUGUC-CUUUGCUGCgccGCUCg -3' miRNA: 3'- ugCUUUUGCGGcGGAACGGCGa--CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 158791 | 0.67 | 0.866659 |
Target: 5'- gACGAAGAggaggaccaauuauuCGCCgagGCCUUGCCcCcGCUCu -3' miRNA: 3'- -UGCUUUU---------------GCGG---CGGAACGGcGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 97239 | 0.66 | 0.881268 |
Target: 5'- cGCGAAcgcagcagcaagauGugGCCGCCgggccuuggcacggUagugGCCGCUGcCUCg -3' miRNA: 3'- -UGCUU--------------UugCGGCGG--------------Aa---CGGCGAC-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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