miRNA display CGI


Results 101 - 120 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 46418 0.66 0.885478
Target:  5'- cGCGAGGcugcACGCCGCC---CUGC-GCUCg -3'
miRNA:   3'- -UGCUUU----UGCGGCGGaacGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 21 0.66 0.885478
Target:  5'- cACGccauAACGCCGCg--GCCcuaGCUGUUCg -3'
miRNA:   3'- -UGCuu--UUGCGGCGgaaCGG---CGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 118960 0.66 0.885478
Target:  5'- ----cGGCGCCcCCuUUGCCGC-GCUCg -3'
miRNA:   3'- ugcuuUUGCGGcGG-AACGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 64430 0.66 0.878417
Target:  5'- cACGgcGAUGaCGUC-UGCCGCgGCUCu -3'
miRNA:   3'- -UGCuuUUGCgGCGGaACGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 7959 0.66 0.878417
Target:  5'- gGCGucuuuguCGCUGCCUagagGUCGUUGCUUu -3'
miRNA:   3'- -UGCuuuu---GCGGCGGAa---CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 17681 0.67 0.855921
Target:  5'- ---cAGGCGCaGCCgagGCCGCggcgGCUCg -3'
miRNA:   3'- ugcuUUUGCGgCGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 157411 0.66 0.905284
Target:  5'- gGCGAGAGCGgcgaCGCCgagacagaUGCCGCguacgcccUGCUg -3'
miRNA:   3'- -UGCUUUUGCg---GCGGa-------ACGGCG--------ACGAg -5'
24378 3' -56.1 NC_005264.1 + 160218 0.67 0.848004
Target:  5'- -aGAAGACuCCGCCccGCCuGCUcgGCUCg -3'
miRNA:   3'- ugCUUUUGcGGCGGaaCGG-CGA--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 155776 0.68 0.823092
Target:  5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 6414 0.67 0.831582
Target:  5'- gGCGAucacCGCCGCCa-GCCGCagGCa- -3'
miRNA:   3'- -UGCUuuu-GCGGCGGaaCGGCGa-CGag -5'
24378 3' -56.1 NC_005264.1 + 131236 0.67 0.831582
Target:  5'- gGCGAugcGCGCCGCCUcGCCagagaGCaGaCUCg -3'
miRNA:   3'- -UGCUuu-UGCGGCGGAaCGG-----CGaC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 58019 0.67 0.839889
Target:  5'- gGCGGAcAgGCCGUCgUGCgGCgcccGCUCg -3'
miRNA:   3'- -UGCUUuUgCGGCGGaACGgCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 23697 0.67 0.842344
Target:  5'- uGCGGGAACGCCgaccgacccucaacGCCcaaagggcacacGCCGCcGCUCa -3'
miRNA:   3'- -UGCUUUUGCGG--------------CGGaa----------CGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 123645 0.67 0.848004
Target:  5'- gGCGuAGGCGCguucucgaaaauCGCCggGCCGCUuCUCg -3'
miRNA:   3'- -UGCuUUUGCG------------GCGGaaCGGCGAcGAG- -5'
24378 3' -56.1 NC_005264.1 + 129484 0.67 0.851195
Target:  5'- aGCGGAu-CGCCGCCgauagGCCGgaucccggucggaacCUGCUa -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa---CGGC---------------GACGAg -5'
24378 3' -56.1 NC_005264.1 + 45891 0.67 0.854354
Target:  5'- cACGAAcuucaguguauuGCGCCGCCgcgGCaauCUGCUCc -3'
miRNA:   3'- -UGCUUu-----------UGCGGCGGaa-CGgc-GACGAG- -5'
24378 3' -56.1 NC_005264.1 + 86802 0.67 0.855921
Target:  5'- aACGggGACauuCCGC--UGCCGCUGUg- -3'
miRNA:   3'- -UGCuuUUGc--GGCGgaACGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 123718 0.65 0.9096
Target:  5'- gGCGAGuGGCGCCGCguccacgacagcagCUggucagacGCCGCUGCcCg -3'
miRNA:   3'- -UGCUU-UUGCGGCG--------------GAa-------CGGCGACGaG- -5'
24378 3' -56.1 NC_005264.1 + 17290 0.66 0.905908
Target:  5'- gGCGGAGG-GCUGCCcaucuaacugaaugGUCGCUGCUUc -3'
miRNA:   3'- -UGCUUUUgCGGCGGaa------------CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 27981 0.66 0.905284
Target:  5'- gUGAcGACGaCCGCCguaGCCGCgGCcCa -3'
miRNA:   3'- uGCUuUUGC-GGCGGaa-CGGCGaCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.