miRNA display CGI


Results 121 - 139 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 3697 0.66 0.905284
Target:  5'- cGCGGAAaggGCGCacaGUaCUUGCCGCgggcggGCUUc -3'
miRNA:   3'- -UGCUUU---UGCGg--CG-GAACGGCGa-----CGAG- -5'
24378 3' -56.1 NC_005264.1 + 7959 0.66 0.878417
Target:  5'- gGCGucuuuguCGCUGCCUagagGUCGUUGCUUu -3'
miRNA:   3'- -UGCuuuu---GCGGCGGAa---CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 129582 0.67 0.871134
Target:  5'- cGCGGAu-CG-CGCgUUcGCCGCUGCUUc -3'
miRNA:   3'- -UGCUUuuGCgGCGgAA-CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 6414 0.67 0.831582
Target:  5'- gGCGAucacCGCCGCCa-GCCGCagGCa- -3'
miRNA:   3'- -UGCUuuu-GCGGCGGaaCGGCGa-CGag -5'
24378 3' -56.1 NC_005264.1 + 131236 0.67 0.831582
Target:  5'- gGCGAugcGCGCCGCCUcGCCagagaGCaGaCUCg -3'
miRNA:   3'- -UGCUuu-UGCGGCGGAaCGG-----CGaC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 58019 0.67 0.839889
Target:  5'- gGCGGAcAgGCCGUCgUGCgGCgcccGCUCg -3'
miRNA:   3'- -UGCUUuUgCGGCGGaACGgCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 23697 0.67 0.842344
Target:  5'- uGCGGGAACGCCgaccgacccucaacGCCcaaagggcacacGCCGCcGCUCa -3'
miRNA:   3'- -UGCUUUUGCGG--------------CGGaa----------CGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 160218 0.67 0.848004
Target:  5'- -aGAAGACuCCGCCccGCCuGCUcgGCUCg -3'
miRNA:   3'- ugCUUUUGcGGCGGaaCGG-CGA--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 123645 0.67 0.848004
Target:  5'- gGCGuAGGCGCguucucgaaaauCGCCggGCCGCUuCUCg -3'
miRNA:   3'- -UGCuUUUGCG------------GCGGaaCGGCGAcGAG- -5'
24378 3' -56.1 NC_005264.1 + 129484 0.67 0.851195
Target:  5'- aGCGGAu-CGCCGCCgauagGCCGgaucccggucggaacCUGCUa -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa---CGGC---------------GACGAg -5'
24378 3' -56.1 NC_005264.1 + 45891 0.67 0.854354
Target:  5'- cACGAAcuucaguguauuGCGCCGCCgcgGCaauCUGCUCc -3'
miRNA:   3'- -UGCUUu-----------UGCGGCGGaa-CGgc-GACGAG- -5'
24378 3' -56.1 NC_005264.1 + 17681 0.67 0.855921
Target:  5'- ---cAGGCGCaGCCgagGCCGCggcgGCUCg -3'
miRNA:   3'- ugcuUUUGCGgCGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 86802 0.67 0.855921
Target:  5'- aACGggGACauuCCGC--UGCCGCUGUg- -3'
miRNA:   3'- -UGCuuUUGc--GGCGgaACGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 157121 0.67 0.861341
Target:  5'- aACGGAGAgaggauuuguuuucCGCCGCCaggcgUUGcCCGCgcGCUCu -3'
miRNA:   3'- -UGCUUUU--------------GCGGCGG-----AAC-GGCGa-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 22137 0.67 0.862871
Target:  5'- aACGAGcgcGACGCgCGCCUUagauugcGCCGCggGC-Cg -3'
miRNA:   3'- -UGCUU---UUGCG-GCGGAA-------CGGCGa-CGaG- -5'
24378 3' -56.1 NC_005264.1 + 79308 0.67 0.868906
Target:  5'- uGCGggGucaugucgcuCGCCGCaUUUGCgugcguagcgugcgCGCUGCUCu -3'
miRNA:   3'- -UGCuuUu---------GCGGCG-GAACG--------------GCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 24630 0.67 0.871134
Target:  5'- aGCGAcuGCgguugucguuugGCCGCCUUGUCuCUGCa- -3'
miRNA:   3'- -UGCUuuUG------------CGGCGGAACGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 57193 0.67 0.871134
Target:  5'- gGC-AAAGCGCCGCCcgUGCCauuaUUGCUa -3'
miRNA:   3'- -UGcUUUUGCGGCGGa-ACGGc---GACGAg -5'
24378 3' -56.1 NC_005264.1 + 68803 0.66 0.905284
Target:  5'- gUGAGcACGaCCGCgUUGCCGaaCUGCgUCa -3'
miRNA:   3'- uGCUUuUGC-GGCGgAACGGC--GACG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.