miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 5' -56.8 NC_005264.1 + 44739 0.7 0.70085
Target:  5'- uCUGAGGuuGGGCcuuaacguAGUUGcUCUCCGCGu -3'
miRNA:   3'- -GGCUCCucUCCGu-------UCAGC-AGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 44881 0.68 0.844814
Target:  5'- cCUGGGGAGgcGGGCccGUCGUCgUCUGgGg -3'
miRNA:   3'- -GGCUCCUC--UCCGuuCAGCAG-AGGCgC- -5'
24378 5' -56.8 NC_005264.1 + 48623 0.73 0.542368
Target:  5'- gCCGGGGAGguGGGCAAGccggCGUCgguuggguauUCCGCu -3'
miRNA:   3'- -GGCUCCUC--UCCGUUCa---GCAG----------AGGCGc -5'
24378 5' -56.8 NC_005264.1 + 51829 0.69 0.758347
Target:  5'- aCCaGGaGAGGGGUggG-CG-CUCCGCGg -3'
miRNA:   3'- -GGcUC-CUCUCCGuuCaGCaGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 53129 0.68 0.812025
Target:  5'- gCCGAGGAGgccGGGCAA----UCUgCCGCGg -3'
miRNA:   3'- -GGCUCCUC---UCCGUUcagcAGA-GGCGC- -5'
24378 5' -56.8 NC_005264.1 + 53213 0.66 0.901231
Target:  5'- gCCGAGGuAGuGGaCGcGUa-UCUCCGCGa -3'
miRNA:   3'- -GGCUCC-UCuCC-GUuCAgcAGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 59017 0.72 0.601458
Target:  5'- aUCGcGGAGgcAGGCGcgucaGGUCgGUCUCCGCGc -3'
miRNA:   3'- -GGCuCCUC--UCCGU-----UCAG-CAGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 64705 0.66 0.913197
Target:  5'- -gGAGGGGA-GCGAGUuuacugCGUCcUCCGUGu -3'
miRNA:   3'- ggCUCCUCUcCGUUCA------GCAG-AGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 76502 0.67 0.88838
Target:  5'- gUCGGGGGGAauaGGCGAc-CGUCUaCCGCc -3'
miRNA:   3'- -GGCUCCUCU---CCGUUcaGCAGA-GGCGc -5'
24378 5' -56.8 NC_005264.1 + 83012 0.69 0.785777
Target:  5'- uCUGuuGGAGGGGCAuguuUCGUCgCCGCa -3'
miRNA:   3'- -GGCu-CCUCUCCGUuc--AGCAGaGGCGc -5'
24378 5' -56.8 NC_005264.1 + 91879 0.66 0.924261
Target:  5'- gUCGAGGuAGcGGGguGGUUGg--CCGCGg -3'
miRNA:   3'- -GGCUCC-UC-UCCguUCAGCagaGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 95933 0.66 0.909111
Target:  5'- gCCGAGGAGAuuucaaagacgguccGGgAuaugguGUCGcggcugcUCUCCGCGc -3'
miRNA:   3'- -GGCUCCUCU---------------CCgUu-----CAGC-------AGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 100999 0.72 0.601458
Target:  5'- gCCGAGGGGAuuGGCGauacgGGUCGUcCUCauaaGCGu -3'
miRNA:   3'- -GGCUCCUCU--CCGU-----UCAGCA-GAGg---CGC- -5'
24378 5' -56.8 NC_005264.1 + 120452 0.67 0.88838
Target:  5'- gCGGGGAuGAGGaAAGg-GcCUCCGCGg -3'
miRNA:   3'- gGCUCCU-CUCCgUUCagCaGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 121648 0.66 0.894915
Target:  5'- gCCGAgcaGGcGGGGCgGAGUCuucuGUCUCCGUc -3'
miRNA:   3'- -GGCU---CCuCUCCG-UUCAG----CAGAGGCGc -5'
24378 5' -56.8 NC_005264.1 + 123550 0.67 0.88838
Target:  5'- uCCGcGGAGGGGgAggGGUgGUCUUCgGCGu -3'
miRNA:   3'- -GGCuCCUCUCCgU--UCAgCAGAGG-CGC- -5'
24378 5' -56.8 NC_005264.1 + 124894 0.69 0.775845
Target:  5'- aUCGAGGGGgaGGGCGAGuucucuagaccucUCGUCUgCGgGg -3'
miRNA:   3'- -GGCUCCUC--UCCGUUC-------------AGCAGAgGCgC- -5'
24378 5' -56.8 NC_005264.1 + 125991 0.69 0.758347
Target:  5'- gCgGAGGAGGGGCAgacAGUUGcugucuacgaUCUUCGCc -3'
miRNA:   3'- -GgCUCCUCUCCGU---UCAGC----------AGAGGCGc -5'
24378 5' -56.8 NC_005264.1 + 126395 1.11 0.002281
Target:  5'- gCCGAGGAGAGGCAAGUCGUCUCCGCGg -3'
miRNA:   3'- -GGCUCCUCUCCGUUCAGCAGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 132301 0.71 0.691025
Target:  5'- aCGAGGGuucgcgccagcGAGGCGGGUCGUggagCUCCcCGg -3'
miRNA:   3'- gGCUCCU-----------CUCCGUUCAGCA----GAGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.