miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 5' -56.8 NC_005264.1 + 44881 0.68 0.844814
Target:  5'- cCUGGGGAGgcGGGCccGUCGUCgUCUGgGg -3'
miRNA:   3'- -GGCUCCUC--UCCGuuCAGCAG-AGGCgC- -5'
24378 5' -56.8 NC_005264.1 + 37336 0.68 0.836875
Target:  5'- aCGAGGAuaGAGGCuuuGUUGg--CCGCGc -3'
miRNA:   3'- gGCUCCU--CUCCGuu-CAGCagaGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 4670 0.68 0.836875
Target:  5'- aCGAGGAGGGGUuugccugcgaAAGcUG-CUCUGCGa -3'
miRNA:   3'- gGCUCCUCUCCG----------UUCaGCaGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 162256 0.68 0.820474
Target:  5'- gCUGccGGAGucGGGCGAGUCGUCUUgGUc -3'
miRNA:   3'- -GGCu-CCUC--UCCGUUCAGCAGAGgCGc -5'
24378 5' -56.8 NC_005264.1 + 23345 0.68 0.812025
Target:  5'- gCGGGGucugccccGAGGCGauucucuccAGUCG-CUCCGCa -3'
miRNA:   3'- gGCUCCu-------CUCCGU---------UCAGCaGAGGCGc -5'
24378 5' -56.8 NC_005264.1 + 53129 0.68 0.812025
Target:  5'- gCCGAGGAGgccGGGCAA----UCUgCCGCGg -3'
miRNA:   3'- -GGCUCCUC---UCCGUUcagcAGA-GGCGC- -5'
24378 5' -56.8 NC_005264.1 + 26390 0.69 0.785777
Target:  5'- gCGAGGAGAaGCAAGcCGUagCCGCc -3'
miRNA:   3'- gGCUCCUCUcCGUUCaGCAgaGGCGc -5'
24378 5' -56.8 NC_005264.1 + 83012 0.69 0.785777
Target:  5'- uCUGuuGGAGGGGCAuguuUCGUCgCCGCa -3'
miRNA:   3'- -GGCu-CCUCUCCGUuc--AGCAGaGGCGc -5'
24378 5' -56.8 NC_005264.1 + 124894 0.69 0.775845
Target:  5'- aUCGAGGGGgaGGGCGAGuucucuagaccucUCGUCUgCGgGg -3'
miRNA:   3'- -GGCUCCUC--UCCGUUC-------------AGCAGAgGCgC- -5'
24378 5' -56.8 NC_005264.1 + 5868 0.69 0.775845
Target:  5'- aUCGAGGGGgaGGGCGAGuucucuagaccucUCGUCUgCGgGg -3'
miRNA:   3'- -GGCUCCUC--UCCGUUC-------------AGCAGAgGCgC- -5'
24378 5' -56.8 NC_005264.1 + 125991 0.69 0.758347
Target:  5'- gCgGAGGAGGGGCAgacAGUUGcugucuacgaUCUUCGCc -3'
miRNA:   3'- -GgCUCCUCUCCGU---UCAGC----------AGAGGCGc -5'
24378 5' -56.8 NC_005264.1 + 51829 0.69 0.758347
Target:  5'- aCCaGGaGAGGGGUggG-CG-CUCCGCGg -3'
miRNA:   3'- -GGcUC-CUCUCCGuuCaGCaGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 37573 0.7 0.71062
Target:  5'- gCGAcGGAGGcGGCAAGUC-UCgcggcggCCGCGg -3'
miRNA:   3'- gGCU-CCUCU-CCGUUCAGcAGa------GGCGC- -5'
24378 5' -56.8 NC_005264.1 + 156600 0.7 0.71062
Target:  5'- gCGAcGGAGGcGGCAAGUC-UCgcggcggCCGCGg -3'
miRNA:   3'- gGCU-CCUCU-CCGUUCAGcAGa------GGCGC- -5'
24378 5' -56.8 NC_005264.1 + 44739 0.7 0.70085
Target:  5'- uCUGAGGuuGGGCcuuaacguAGUUGcUCUCCGCGu -3'
miRNA:   3'- -GGCUCCucUCCGu-------UCAGC-AGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 132301 0.71 0.691025
Target:  5'- aCGAGGGuucgcgccagcGAGGCGGGUCGUggagCUCCcCGg -3'
miRNA:   3'- gGCUCCU-----------CUCCGUUCAGCA----GAGGcGC- -5'
24378 5' -56.8 NC_005264.1 + 13274 0.71 0.691025
Target:  5'- aCGAGGGuucgcgccagcGAGGCGGGUCGUggagCUCCcCGg -3'
miRNA:   3'- gGCUCCU-----------CUCCGUUCAGCA----GAGGcGC- -5'
24378 5' -56.8 NC_005264.1 + 155320 0.71 0.65134
Target:  5'- gCGAGGAGAgGGCGGacGUCGUCgcuaUCGCu -3'
miRNA:   3'- gGCUCCUCU-CCGUU--CAGCAGa---GGCGc -5'
24378 5' -56.8 NC_005264.1 + 156147 0.71 0.65134
Target:  5'- aCGAGGGcGAGGC-GGcCGUCUCgGCc -3'
miRNA:   3'- gGCUCCU-CUCCGuUCaGCAGAGgCGc -5'
24378 5' -56.8 NC_005264.1 + 150608 0.71 0.65134
Target:  5'- gCCaGAGGuGGGGCGAGUCuGcUCUCUgGCGa -3'
miRNA:   3'- -GG-CUCCuCUCCGUUCAG-C-AGAGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.