Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24379 | 3' | -59.1 | NC_005264.1 | + | 122518 | 0.68 | 0.662634 |
Target: 5'- ------cUGGUCCCgacaCUGCUGCGCUCg -3' miRNA: 3'- uaacaacGCCAGGGa---GACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 133695 | 0.68 | 0.652604 |
Target: 5'- -----cGCGGUCCUUgCcGCCGCGCaCUg -3' miRNA: 3'- uaacaaCGCCAGGGA-GaCGGCGCG-GG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 56964 | 0.68 | 0.641553 |
Target: 5'- -cUGUgGCGGcgacgagUCCCUCgucGcCCGCGCUCg -3' miRNA: 3'- uaACAaCGCC-------AGGGAGa--C-GGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 117428 | 0.69 | 0.635521 |
Target: 5'- -cUGUcGCGGcgcgcagggcgccgCCCUCcaucguuUGCCGCGCCUu -3' miRNA: 3'- uaACAaCGCCa-------------GGGAG-------ACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 126008 | 0.69 | 0.632504 |
Target: 5'- --aGUUGCuGUCUacgaUCUucGCCGCGCCUc -3' miRNA: 3'- uaaCAACGcCAGGg---AGA--CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 147049 | 0.69 | 0.622451 |
Target: 5'- -aUGUUaGCGGgcuuucuguUCUCUCUGCU-CGCCCg -3' miRNA: 3'- uaACAA-CGCC---------AGGGAGACGGcGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 162581 | 0.7 | 0.56252 |
Target: 5'- -----aGUGGg-CUUCUGCCGCGUCCa -3' miRNA: 3'- uaacaaCGCCagGGAGACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 142869 | 0.7 | 0.56252 |
Target: 5'- uUUGUUGC-GUCgaCUCgcGCCGCGCCUu -3' miRNA: 3'- uAACAACGcCAGg-GAGa-CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 118961 | 0.71 | 0.466881 |
Target: 5'- -----gGCGccCCCUUUGCCGCGCUCg -3' miRNA: 3'- uaacaaCGCcaGGGAGACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 35805 | 0.72 | 0.44874 |
Target: 5'- --cGUgGCGGgCgCCUCUGCCG-GCCCc -3' miRNA: 3'- uaaCAaCGCCaG-GGAGACGGCgCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 154831 | 0.72 | 0.44874 |
Target: 5'- --cGUgGCGGgCgCCUCUGCCG-GCCCc -3' miRNA: 3'- uaaCAaCGCCaG-GGAGACGGCgCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 100382 | 0.73 | 0.396778 |
Target: 5'- -aUGcUGCGGaUgCCgCUGCUGCGCCCc -3' miRNA: 3'- uaACaACGCC-AgGGaGACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 107656 | 0.74 | 0.326483 |
Target: 5'- --cGUUucGCGGUcgccgCCUUCaGCCGCGCCCa -3' miRNA: 3'- uaaCAA--CGCCA-----GGGAGaCGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 125449 | 1.09 | 0.001417 |
Target: 5'- gAUUGUUGCGGUCCCUCUGCCGCGCCCu -3' miRNA: 3'- -UAACAACGCCAGGGAGACGGCGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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