miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 3' -61 NC_005264.1 + 57990 0.66 0.702863
Target:  5'- cCGCGCGGCggccgUGGCUcAGCgGCCCCg--- -3'
miRNA:   3'- -GCGCGUUG-----ACCGA-UUGgCGGGGgggu -5'
24380 3' -61 NC_005264.1 + 34909 0.66 0.71254
Target:  5'- aGgGCAggguuACUGGCccaGugCGCCCgCCUCAg -3'
miRNA:   3'- gCgCGU-----UGACCGa--UugGCGGG-GGGGU- -5'
24380 3' -61 NC_005264.1 + 133361 0.66 0.71254
Target:  5'- uGCcUAGCccUGcGCUGcACCGCCCCCCa- -3'
miRNA:   3'- gCGcGUUG--AC-CGAU-UGGCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 69418 0.67 0.634009
Target:  5'- aGCGU-ACUGGCUccgGGuuGCCCCUUCc -3'
miRNA:   3'- gCGCGuUGACCGA---UUggCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 16105 0.67 0.64391
Target:  5'- uGCGCGGCcgGGUUcuuuCUGCCCCgCUCAu -3'
miRNA:   3'- gCGCGUUGa-CCGAuu--GGCGGGG-GGGU- -5'
24380 3' -61 NC_005264.1 + 60676 0.67 0.64391
Target:  5'- uCGCGCAGCUgGGCUc-CCaagGCCUCCgCAg -3'
miRNA:   3'- -GCGCGUUGA-CCGAuuGG---CGGGGGgGU- -5'
24380 3' -61 NC_005264.1 + 119793 0.67 0.64391
Target:  5'- gCGCGCGAgaGGUUu-CUGCUaCCCCCu -3'
miRNA:   3'- -GCGCGUUgaCCGAuuGGCGG-GGGGGu -5'
24380 3' -61 NC_005264.1 + 120974 0.67 0.653801
Target:  5'- uGCGCGGCc-GUUGcCCcCCCCCCCGa -3'
miRNA:   3'- gCGCGUUGacCGAUuGGcGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 133592 0.67 0.653801
Target:  5'- uGCGCGccgcagucuccGCUGuGCUccucGACCGCuggCUCCCCAu -3'
miRNA:   3'- gCGCGU-----------UGAC-CGA----UUGGCG---GGGGGGU- -5'
24380 3' -61 NC_005264.1 + 71926 0.67 0.663677
Target:  5'- gGCGCucuGCaGGCaggaGAUCGUgCCCCCAa -3'
miRNA:   3'- gCGCGu--UGaCCGa---UUGGCGgGGGGGU- -5'
24380 3' -61 NC_005264.1 + 114444 0.67 0.624107
Target:  5'- -cCGCucCUGGCc-GCCGCCCgacgCCCCAg -3'
miRNA:   3'- gcGCGuuGACCGauUGGCGGG----GGGGU- -5'
24380 3' -61 NC_005264.1 + 46159 0.67 0.614211
Target:  5'- aCGCGUguuuguccccugGAUcGGC-GGCCGCCCCgCCAu -3'
miRNA:   3'- -GCGCG------------UUGaCCGaUUGGCGGGGgGGU- -5'
24380 3' -61 NC_005264.1 + 24414 0.67 0.614211
Target:  5'- gCGCGCGGC-GcGUUAAacaCGCCCgCCCGg -3'
miRNA:   3'- -GCGCGUUGaC-CGAUUg--GCGGGgGGGU- -5'
24380 3' -61 NC_005264.1 + 8716 0.67 0.614211
Target:  5'- gCGCGCGcgUGGCc-GCCGUuucggcucgCCCCCCGu -3'
miRNA:   3'- -GCGCGUugACCGauUGGCG---------GGGGGGU- -5'
24380 3' -61 NC_005264.1 + 128323 0.67 0.64391
Target:  5'- gGUGCGGuCgaaGGCguaugacACCGCCCCCCa- -3'
miRNA:   3'- gCGCGUU-Ga--CCGau-----UGGCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 146675 0.67 0.64391
Target:  5'- cCGCGUAACU---UAGCCGCCCCUUg- -3'
miRNA:   3'- -GCGCGUUGAccgAUUGGCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 1948 0.67 0.653801
Target:  5'- uGCGCGGCc-GUUGcCCcCCCCCCCGa -3'
miRNA:   3'- gCGCGUUGacCGAUuGGcGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 114487 0.67 0.653801
Target:  5'- uGCGCAACgaggccgccaUGGC-GugCGCCaacuCCCCAg -3'
miRNA:   3'- gCGCGUUG----------ACCGaUugGCGGg---GGGGU- -5'
24380 3' -61 NC_005264.1 + 143974 0.67 0.65479
Target:  5'- aGUGCGAaagugacguaggggGGU--GCCGCCCCCUCGa -3'
miRNA:   3'- gCGCGUUga------------CCGauUGGCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 13235 0.67 0.667621
Target:  5'- aGCGCAGCgaccgcaaagacucGGCaucgAGCaGCCCCCCUc -3'
miRNA:   3'- gCGCGUUGa-------------CCGa---UUGgCGGGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.