miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 3' -61 NC_005264.1 + 125263 0.66 0.673529
Target:  5'- gGCGCGACUuGUUcuUCGCCCUCCgCGg -3'
miRNA:   3'- gCGCGUUGAcCGAuuGGCGGGGGG-GU- -5'
24380 3' -61 NC_005264.1 + 117957 0.66 0.673529
Target:  5'- aGaCGaCGACgGGC---CCGCCUCCCCAg -3'
miRNA:   3'- gC-GC-GUUGaCCGauuGGCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 68255 0.66 0.671561
Target:  5'- cCGCGCcGCgGGCggccugcugcuGCCGCCUcuuugcguCCCCAg -3'
miRNA:   3'- -GCGCGuUGaCCGau---------UGGCGGG--------GGGGU- -5'
24380 3' -61 NC_005264.1 + 13235 0.67 0.667621
Target:  5'- aGCGCAGCgaccgcaaagacucGGCaucgAGCaGCCCCCCUc -3'
miRNA:   3'- gCGCGUUGa-------------CCGa---UUGgCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 71926 0.67 0.663677
Target:  5'- gGCGCucuGCaGGCaggaGAUCGUgCCCCCAa -3'
miRNA:   3'- gCGCGu--UGaCCGa---UUGGCGgGGGGGU- -5'
24380 3' -61 NC_005264.1 + 143974 0.67 0.65479
Target:  5'- aGUGCGAaagugacguaggggGGU--GCCGCCCCCUCGa -3'
miRNA:   3'- gCGCGUUga------------CCGauUGGCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 120974 0.67 0.653801
Target:  5'- uGCGCGGCc-GUUGcCCcCCCCCCCGa -3'
miRNA:   3'- gCGCGUUGacCGAUuGGcGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 133592 0.67 0.653801
Target:  5'- uGCGCGccgcagucuccGCUGuGCUccucGACCGCuggCUCCCCAu -3'
miRNA:   3'- gCGCGU-----------UGAC-CGA----UUGGCG---GGGGGGU- -5'
24380 3' -61 NC_005264.1 + 1948 0.67 0.653801
Target:  5'- uGCGCGGCc-GUUGcCCcCCCCCCCGa -3'
miRNA:   3'- gCGCGUUGacCGAUuGGcGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 114487 0.67 0.653801
Target:  5'- uGCGCAACgaggccgccaUGGC-GugCGCCaacuCCCCAg -3'
miRNA:   3'- gCGCGUUG----------ACCGaUugGCGGg---GGGGU- -5'
24380 3' -61 NC_005264.1 + 119793 0.67 0.64391
Target:  5'- gCGCGCGAgaGGUUu-CUGCUaCCCCCu -3'
miRNA:   3'- -GCGCGUUgaCCGAuuGGCGG-GGGGGu -5'
24380 3' -61 NC_005264.1 + 16105 0.67 0.64391
Target:  5'- uGCGCGGCcgGGUUcuuuCUGCCCCgCUCAu -3'
miRNA:   3'- gCGCGUUGa-CCGAuu--GGCGGGG-GGGU- -5'
24380 3' -61 NC_005264.1 + 767 0.67 0.64391
Target:  5'- gCGCGCGAgaGGUUu-CUGCUaCCCCCu -3'
miRNA:   3'- -GCGCGUUgaCCGAuuGGCGG-GGGGGu -5'
24380 3' -61 NC_005264.1 + 128323 0.67 0.64391
Target:  5'- gGUGCGGuCgaaGGCguaugacACCGCCCCCCa- -3'
miRNA:   3'- gCGCGUU-Ga--CCGau-----UGGCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 146675 0.67 0.64391
Target:  5'- cCGCGUAACU---UAGCCGCCCCUUg- -3'
miRNA:   3'- -GCGCGUUGAccgAUUGGCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 60676 0.67 0.64391
Target:  5'- uCGCGCAGCUgGGCUc-CCaagGCCUCCgCAg -3'
miRNA:   3'- -GCGCGUUGA-CCGAuuGG---CGGGGGgGU- -5'
24380 3' -61 NC_005264.1 + 69418 0.67 0.634009
Target:  5'- aGCGU-ACUGGCUccgGGuuGCCCCUUCc -3'
miRNA:   3'- gCGCGuUGACCGA---UUggCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 16078 0.67 0.634009
Target:  5'- cCGCGCGGCgcuuGCUGuugccggguCCGCCgCCCUCGu -3'
miRNA:   3'- -GCGCGUUGac--CGAUu--------GGCGG-GGGGGU- -5'
24380 3' -61 NC_005264.1 + 114444 0.67 0.624107
Target:  5'- -cCGCucCUGGCc-GCCGCCCgacgCCCCAg -3'
miRNA:   3'- gcGCGuuGACCGauUGGCGGG----GGGGU- -5'
24380 3' -61 NC_005264.1 + 27682 0.67 0.624107
Target:  5'- -aCGCGGCUGGCcu-CUGCCUCgCCGa -3'
miRNA:   3'- gcGCGUUGACCGauuGGCGGGGgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.