miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 5' -45.4 NC_005264.1 + 57888 0.67 0.999973
Target:  5'- -----cGGCCAUGGcGCGGAUgaaucGUACGa -3'
miRNA:   3'- guauuuCUGGUGCCuCGCUUA-----UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 84066 0.67 0.999973
Target:  5'- uCAUAAAGAUCGCGGuG-GAAaggGUGCu -3'
miRNA:   3'- -GUAUUUCUGGUGCCuCgCUUa--UAUGc -5'
24380 5' -45.4 NC_005264.1 + 139472 0.67 0.999973
Target:  5'- --gAGAGAUUGCGGAGCGAc------ -3'
miRNA:   3'- guaUUUCUGGUGCCUCGCUuauaugc -5'
24380 5' -45.4 NC_005264.1 + 162336 0.67 0.999973
Target:  5'- ----uGGGCCACGGAGgGAGgagggaggaGCGg -3'
miRNA:   3'- guauuUCUGGUGCCUCgCUUaua------UGC- -5'
24380 5' -45.4 NC_005264.1 + 52200 0.67 0.999973
Target:  5'- -cUGAGGGCCGUGGGGCGcGGUGgcGCGa -3'
miRNA:   3'- guAUUUCUGGUGCCUCGC-UUAUa-UGC- -5'
24380 5' -45.4 NC_005264.1 + 94407 0.67 0.999964
Target:  5'- ----cAGACCGCGGcGCGGAcUGcGCGa -3'
miRNA:   3'- guauuUCUGGUGCCuCGCUU-AUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 156994 0.67 0.999964
Target:  5'- gAUAGGGcgauaACCGCGGccaGGCGAGUG-GCGg -3'
miRNA:   3'- gUAUUUC-----UGGUGCC---UCGCUUAUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 37967 0.67 0.999964
Target:  5'- gAUAGGGcgauaACCGCGGccaGGCGAGUG-GCGg -3'
miRNA:   3'- gUAUUUC-----UGGUGCC---UCGCUUAUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 158975 0.68 0.999951
Target:  5'- ---uGGGGCCACGGcgaccucggcuGCGAGUcUGCGg -3'
miRNA:   3'- guauUUCUGGUGCCu----------CGCUUAuAUGC- -5'
24380 5' -45.4 NC_005264.1 + 48542 0.68 0.999951
Target:  5'- ------uGCCGCGGGGUGAAaaaAUACGa -3'
miRNA:   3'- guauuucUGGUGCCUCGCUUa--UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 39948 0.68 0.999951
Target:  5'- ---uGGGGCCACGGcgaccucggcuGCGAGUcUGCGg -3'
miRNA:   3'- guauUUCUGGUGCCu----------CGCUUAuAUGC- -5'
24380 5' -45.4 NC_005264.1 + 33909 0.68 0.999951
Target:  5'- --aGAAGACaugGCGGAGCGAGcccacACGa -3'
miRNA:   3'- guaUUUCUGg--UGCCUCGCUUaua--UGC- -5'
24380 5' -45.4 NC_005264.1 + 48777 0.68 0.999949
Target:  5'- aCAUAGAGugCaaggccgGCGGGGCGA----ACGa -3'
miRNA:   3'- -GUAUUUCugG-------UGCCUCGCUuauaUGC- -5'
24380 5' -45.4 NC_005264.1 + 33399 0.68 0.999934
Target:  5'- gAUGgcGACCGCGGugauguugGGCGAGUAcGCc -3'
miRNA:   3'- gUAUuuCUGGUGCC--------UCGCUUAUaUGc -5'
24380 5' -45.4 NC_005264.1 + 48678 0.68 0.999934
Target:  5'- --aGGAGAUCugGGcGCGAGUcUGCu -3'
miRNA:   3'- guaUUUCUGGugCCuCGCUUAuAUGc -5'
24380 5' -45.4 NC_005264.1 + 125641 0.68 0.999934
Target:  5'- --gGGAGuCCAUGGAGCGGcgccGUAaaaUGCGu -3'
miRNA:   3'- guaUUUCuGGUGCCUCGCU----UAU---AUGC- -5'
24380 5' -45.4 NC_005264.1 + 54279 0.68 0.999932
Target:  5'- --cGAGGACCAUGGccaauugGGCGAAagagacGUGCGa -3'
miRNA:   3'- guaUUUCUGGUGCC-------UCGCUUa-----UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 112666 0.68 0.999913
Target:  5'- gAUGAcGGCCACGGAGUau---UGCGg -3'
miRNA:   3'- gUAUUuCUGGUGCCUCGcuuauAUGC- -5'
24380 5' -45.4 NC_005264.1 + 79407 0.68 0.999913
Target:  5'- gCGUGgcGAGGCCGCGGcggaacccAGCGugggcgGUGCGg -3'
miRNA:   3'- -GUAU--UUCUGGUGCC--------UCGCuua---UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 152681 0.68 0.999886
Target:  5'- ---uGGGACCAagcgGGGGCGggUAUGa- -3'
miRNA:   3'- guauUUCUGGUg---CCUCGCuuAUAUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.