miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24381 3' -56 NC_005264.1 + 48196 0.66 0.914374
Target:  5'- aGCGUGCUcGUucgUCUGUgCCGGGCCgaGa -3'
miRNA:   3'- aCGCGCGAuUA---GGACA-GGUCUGGgaC- -5'
24381 3' -56 NC_005264.1 + 82370 0.66 0.902138
Target:  5'- gGCGCGUcGAUCCgGUgCCGGGCgCa- -3'
miRNA:   3'- aCGCGCGaUUAGGaCA-GGUCUGgGac -5'
24381 3' -56 NC_005264.1 + 49599 0.66 0.895667
Target:  5'- uUGCGaCGC-GAUCUaGUCCuAGcCCCUGg -3'
miRNA:   3'- -ACGC-GCGaUUAGGaCAGG-UCuGGGAC- -5'
24381 3' -56 NC_005264.1 + 142508 0.66 0.888963
Target:  5'- gGCGCGUU--UCCUGcuugCCGGugCCc- -3'
miRNA:   3'- aCGCGCGAuuAGGACa---GGUCugGGac -5'
24381 3' -56 NC_005264.1 + 112367 0.66 0.882032
Target:  5'- uUGC-CGC-GGUCCUGUCCgaGGACaCCUu -3'
miRNA:   3'- -ACGcGCGaUUAGGACAGG--UCUG-GGAc -5'
24381 3' -56 NC_005264.1 + 106973 0.66 0.882032
Target:  5'- uUGCGCuGuCUGAUCCcaaagGaCCAGaaGCCCUGa -3'
miRNA:   3'- -ACGCG-C-GAUUAGGa----CaGGUC--UGGGAC- -5'
24381 3' -56 NC_005264.1 + 128909 0.67 0.867502
Target:  5'- gGCGCGCcacggCCUucCCAG-CCCUGg -3'
miRNA:   3'- aCGCGCGauua-GGAcaGGUCuGGGAC- -5'
24381 3' -56 NC_005264.1 + 9883 0.67 0.867502
Target:  5'- gGCGCGCcacggCCUucCCAG-CCCUGg -3'
miRNA:   3'- aCGCGCGauua-GGAcaGGUCuGGGAC- -5'
24381 3' -56 NC_005264.1 + 159150 0.67 0.859914
Target:  5'- cUGUGCGCccuuUCCgcgCCAGGCCCc- -3'
miRNA:   3'- -ACGCGCGauu-AGGacaGGUCUGGGac -5'
24381 3' -56 NC_005264.1 + 8244 0.68 0.80138
Target:  5'- aGCGCgGUUAGUCUgg-CCAGcggcGCCCUGg -3'
miRNA:   3'- aCGCG-CGAUUAGGacaGGUC----UGGGAC- -5'
24381 3' -56 NC_005264.1 + 15090 0.69 0.783143
Target:  5'- cGCGCGCUuauaauAUCggcgaCUGggCCAGGCCCa- -3'
miRNA:   3'- aCGCGCGAu-----UAG-----GACa-GGUCUGGGac -5'
24381 3' -56 NC_005264.1 + 132032 0.69 0.783143
Target:  5'- aGgGaCGCgacUCCUGUCUGGGCCCg- -3'
miRNA:   3'- aCgC-GCGauuAGGACAGGUCUGGGac -5'
24381 3' -56 NC_005264.1 + 40926 0.69 0.773816
Target:  5'- cGCGgGCUAGcUUCUGaaCAGACCCg- -3'
miRNA:   3'- aCGCgCGAUU-AGGACagGUCUGGGac -5'
24381 3' -56 NC_005264.1 + 92217 0.69 0.745104
Target:  5'- cUGCGCGCgaacuUCUcGUCCAGcauGCUCUGa -3'
miRNA:   3'- -ACGCGCGauu--AGGaCAGGUC---UGGGAC- -5'
24381 3' -56 NC_005264.1 + 23364 0.7 0.735322
Target:  5'- aGCGUGCUcgauGGUCCgaUCCAGACacgCCUGg -3'
miRNA:   3'- aCGCGCGA----UUAGGacAGGUCUG---GGAC- -5'
24381 3' -56 NC_005264.1 + 124319 1.08 0.00336
Target:  5'- cUGCGCGCUAAUCCUGUCCAGACCCUGu -3'
miRNA:   3'- -ACGCGCGAUUAGGACAGGUCUGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.