miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24381 5' -50 NC_005264.1 + 124354 1.09 0.011449
Target:  5'- cAUCAUAGACGUAGGAGAGAAAGCGCGg -3'
miRNA:   3'- -UAGUAUCUGCAUCCUCUCUUUCGCGC- -5'
24381 5' -50 NC_005264.1 + 99527 0.77 0.691982
Target:  5'- uUCAgguUAGACGUAGGGGAGAgcgacgAGGaCGCGu -3'
miRNA:   3'- uAGU---AUCUGCAUCCUCUCU------UUC-GCGC- -5'
24381 5' -50 NC_005264.1 + 44900 0.76 0.743867
Target:  5'- cGUCGUcugGGGCGggAGGAGAGAuccGGCGCa -3'
miRNA:   3'- -UAGUA---UCUGCa-UCCUCUCUu--UCGCGc -5'
24381 5' -50 NC_005264.1 + 67868 0.7 0.949643
Target:  5'- gGUUGUAGGCGUA-GAGGGAAugGGcCGCGa -3'
miRNA:   3'- -UAGUAUCUGCAUcCUCUCUU--UC-GCGC- -5'
24381 5' -50 NC_005264.1 + 47589 0.69 0.976998
Target:  5'- cUCGcggGGACGcguUGGGGGAGAcucGCGCGa -3'
miRNA:   3'- uAGUa--UCUGC---AUCCUCUCUuu-CGCGC- -5'
24381 5' -50 NC_005264.1 + 19031 0.69 0.979423
Target:  5'- cGUgAUGGACGgcAGGcGGGAAAGCGUu -3'
miRNA:   3'- -UAgUAUCUGCa-UCCuCUCUUUCGCGc -5'
24381 5' -50 NC_005264.1 + 20517 0.68 0.985383
Target:  5'- uUCGUAGACGUcucuguguccggcGGGcacGAaGAAGCGCGa -3'
miRNA:   3'- uAGUAUCUGCA-------------UCCu--CUcUUUCGCGC- -5'
24381 5' -50 NC_005264.1 + 154793 0.68 0.987098
Target:  5'- -----cGACGUGGGuGAagaggcgGAGGGCGCGg -3'
miRNA:   3'- uaguauCUGCAUCCuCU-------CUUUCGCGC- -5'
24381 5' -50 NC_005264.1 + 35767 0.68 0.987098
Target:  5'- -----cGACGUGGGuGAagaggcgGAGGGCGCGg -3'
miRNA:   3'- uaguauCUGCAUCCuCU-------CUUUCGCGC- -5'
24381 5' -50 NC_005264.1 + 101173 0.67 0.991444
Target:  5'- --gAUAGGCG-AGGAGAucguGGAAGCGUu -3'
miRNA:   3'- uagUAUCUGCaUCCUCU----CUUUCGCGc -5'
24381 5' -50 NC_005264.1 + 13298 0.67 0.991444
Target:  5'- gGUCGUggagcuccccggaGGACGgccgcgcggagcaggAGGAGAG-GGGCGCGa -3'
miRNA:   3'- -UAGUA-------------UCUGCa--------------UCCUCUCuUUCGCGC- -5'
24381 5' -50 NC_005264.1 + 132325 0.67 0.991444
Target:  5'- gGUCGUggagcuccccggaGGACGgccgcgcggagcaggAGGAGAG-GGGCGCGa -3'
miRNA:   3'- -UAGUA-------------UCUGCa--------------UCCUCUCuUUCGCGC- -5'
24381 5' -50 NC_005264.1 + 154209 0.67 0.992566
Target:  5'- -aCGUAGACGUGGcGGuG-AAGCGCc -3'
miRNA:   3'- uaGUAUCUGCAUCcUCuCuUUCGCGc -5'
24381 5' -50 NC_005264.1 + 162179 0.67 0.993568
Target:  5'- --gGUGGAgCG-GGGAgGGGggGGCGCGu -3'
miRNA:   3'- uagUAUCU-GCaUCCU-CUCuuUCGCGC- -5'
24381 5' -50 NC_005264.1 + 108434 0.67 0.993568
Target:  5'- cUCGUAGcGCGUGGG-GAGAuuAGCGg- -3'
miRNA:   3'- uAGUAUC-UGCAUCCuCUCUu-UCGCgc -5'
24381 5' -50 NC_005264.1 + 109619 0.67 0.993568
Target:  5'- -gCAaauGGCGUGGGc-GGggGGCGCGa -3'
miRNA:   3'- uaGUau-CUGCAUCCucUCuuUCGCGC- -5'
24381 5' -50 NC_005264.1 + 94520 0.67 0.993568
Target:  5'- cGUCGgccACGUGGGAGGGcagcGGCGCc -3'
miRNA:   3'- -UAGUaucUGCAUCCUCUCuu--UCGCGc -5'
24381 5' -50 NC_005264.1 + 43152 0.67 0.993568
Target:  5'- --gGUGGAgCG-GGGAgGGGggGGCGCGu -3'
miRNA:   3'- uagUAUCU-GCaUCCU-CUCuuUCGCGC- -5'
24381 5' -50 NC_005264.1 + 36287 0.67 0.994459
Target:  5'- -gCGUAGGCG-AGGAGAG--GGCGg- -3'
miRNA:   3'- uaGUAUCUGCaUCCUCUCuuUCGCgc -5'
24381 5' -50 NC_005264.1 + 155314 0.67 0.994459
Target:  5'- -gCGUAGGCG-AGGAGAG--GGCGg- -3'
miRNA:   3'- uaGUAUCUGCaUCCUCUCuuUCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.