miRNA display CGI


Results 61 - 80 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 69395 0.66 0.984999
Target:  5'- -gAUACGAUggGCGgguaggCGCGCcuGcCGCCg -3'
miRNA:   3'- agUGUGCUGuuUGCa-----GUGCGu-C-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 4380 0.66 0.984459
Target:  5'- cCGCccCGGCAaaaccGAUGUCuccggcgcugagcaGCGCAGUGCCc -3'
miRNA:   3'- aGUGu-GCUGU-----UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 112301 0.66 0.989643
Target:  5'- -aGCuuCGACAGGCcucUugGCAGCGCa -3'
miRNA:   3'- agUGu-GCUGUUUGca-GugCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 67468 0.66 0.988241
Target:  5'- cCACGCcuGGCAGuuugGCGgCACGCGcCGCCc -3'
miRNA:   3'- aGUGUG--CUGUU----UGCaGUGCGUcGCGG- -5'
24382 3' -52.3 NC_005264.1 + 103818 0.66 0.986696
Target:  5'- cCGCGgGGCuuGCGcUCGauuCGCugAGCGCCa -3'
miRNA:   3'- aGUGUgCUGuuUGC-AGU---GCG--UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 134542 0.66 0.986533
Target:  5'- -gACGCGcccGCAGAaggccaaguacccCGUCACGaccuGCGCCa -3'
miRNA:   3'- agUGUGC---UGUUU-------------GCAGUGCgu--CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 50334 0.66 0.988241
Target:  5'- gUACGCGGCGucgaccuUGUCcUGCGGCaGCCc -3'
miRNA:   3'- aGUGUGCUGUuu-----GCAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 17281 0.66 0.989643
Target:  5'- gCGCugGGCAAACaugguggccacgGUUAcCGCuAGCGCg -3'
miRNA:   3'- aGUGugCUGUUUG------------CAGU-GCG-UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 110385 0.66 0.986696
Target:  5'- cCGCcgACGGCGGGCG-CAUGCuGaCGCUg -3'
miRNA:   3'- aGUG--UGCUGUUUGCaGUGCGuC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 31084 0.66 0.984999
Target:  5'- aUCGuCACGAUGucuuuUGUCGcCGUAGCGCa -3'
miRNA:   3'- -AGU-GUGCUGUuu---GCAGU-GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 157070 0.66 0.985696
Target:  5'- -uGCACGACGGucGCGUgggucUcccagcuuuuuucuuGCGCGGCGUCa -3'
miRNA:   3'- agUGUGCUGUU--UGCA-----G---------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 152004 0.66 0.986696
Target:  5'- -gACACG-CGGGC-UCGCGCAuauCGCCa -3'
miRNA:   3'- agUGUGCuGUUUGcAGUGCGUc--GCGG- -5'
24382 3' -52.3 NC_005264.1 + 46426 0.66 0.982553
Target:  5'- -uGCACGcCGcccugcgcucGACGUCggccugcggcuuuuGCGCGGCGCUc -3'
miRNA:   3'- agUGUGCuGU----------UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 37570 0.66 0.983142
Target:  5'- aC-CGCGACGGAggcggcaaGUCuCGCGGCgGCCg -3'
miRNA:   3'- aGuGUGCUGUUUg-------CAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 136727 0.66 0.983142
Target:  5'- cCGCGCcACGAGC--CGCGCGGUgGCCa -3'
miRNA:   3'- aGUGUGcUGUUUGcaGUGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 67628 0.66 0.989643
Target:  5'- cCACGCGggcGCAGGggUGUCcuGCGCGGC-CCg -3'
miRNA:   3'- aGUGUGC---UGUUU--GCAG--UGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 82952 0.66 0.988241
Target:  5'- gUCGCcuGCGACG---GUCGcCGCcGCGCCc -3'
miRNA:   3'- -AGUG--UGCUGUuugCAGU-GCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 52935 0.66 0.988241
Target:  5'- aUUGCAUGGCc-GCGcC-CGCGGCGCa -3'
miRNA:   3'- -AGUGUGCUGuuUGCaGuGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 73062 0.66 0.988241
Target:  5'- gCACAUgGACGGAUGgccCGCGCGGCa-- -3'
miRNA:   3'- aGUGUG-CUGUUUGCa--GUGCGUCGcgg -5'
24382 3' -52.3 NC_005264.1 + 75085 0.66 0.984999
Target:  5'- uUCuuCGCGGCGcuGCGgcaggCGC-CGGCGCCg -3'
miRNA:   3'- -AGu-GUGCUGUu-UGCa----GUGcGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.