miRNA display CGI


Results 81 - 100 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 146512 0.66 0.988241
Target:  5'- cCGCGCGGuucCAGagcuacGCGUCGagagUGCGGCGCa -3'
miRNA:   3'- aGUGUGCU---GUU------UGCAGU----GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 17281 0.66 0.989643
Target:  5'- gCGCugGGCAAACaugguggccacgGUUAcCGCuAGCGCg -3'
miRNA:   3'- aGUGugCUGUUUG------------CAGU-GCG-UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 29465 0.66 0.989643
Target:  5'- cCACGCGGauugggGGGCGgugcaGCGCAGgGCUa -3'
miRNA:   3'- aGUGUGCUg-----UUUGCag---UGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 152004 0.66 0.986696
Target:  5'- -gACACG-CGGGC-UCGCGCAuauCGCCa -3'
miRNA:   3'- agUGUGCuGUUUGcAGUGCGUc--GCGG- -5'
24382 3' -52.3 NC_005264.1 + 38658 0.66 0.989643
Target:  5'- gUCGa--GAUGAugGcCGCgGCGGCGCCc -3'
miRNA:   3'- -AGUgugCUGUUugCaGUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 88137 0.66 0.988241
Target:  5'- gCugAUGGCcgguuacuucaAGACGUCGCcgGUGGCGCUa -3'
miRNA:   3'- aGugUGCUG-----------UUUGCAGUG--CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 52935 0.66 0.988241
Target:  5'- aUUGCAUGGCc-GCGcC-CGCGGCGCa -3'
miRNA:   3'- -AGUGUGCUGuuUGCaGuGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 6671 0.67 0.97117
Target:  5'- cCACGCcGCAAA-GcCGCGCAuauGCGCCc -3'
miRNA:   3'- aGUGUGcUGUUUgCaGUGCGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 124725 0.67 0.97117
Target:  5'- gCGCGCGGgcAACGcCugGCGGCGg- -3'
miRNA:   3'- aGUGUGCUguUUGCaGugCGUCGCgg -5'
24382 3' -52.3 NC_005264.1 + 47381 0.67 0.973137
Target:  5'- aUugGCGAUAAuaagcgagaguggcGCGUggUugGguGCGCCg -3'
miRNA:   3'- aGugUGCUGUU--------------UGCA--GugCguCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 158132 0.67 0.97117
Target:  5'- gCGuCugGACcAGCugcuGUCguggACGCGGCGCCa -3'
miRNA:   3'- aGU-GugCUGuUUG----CAG----UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 36510 0.67 0.97368
Target:  5'- gCGCGCGGCcucgacgAGGCGg-GCGCAGgaGCCa -3'
miRNA:   3'- aGUGUGCUG-------UUUGCagUGCGUCg-CGG- -5'
24382 3' -52.3 NC_005264.1 + 62719 0.67 0.97117
Target:  5'- aUCGgcCGCGACGAuucccgcaaccGCGUCGucgcugagcccCGCGGcCGCCa -3'
miRNA:   3'- -AGU--GUGCUGUU-----------UGCAGU-----------GCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 37178 0.67 0.978915
Target:  5'- aCGCugGgccGCAGACG-CAUuuuaCGGCGCCg -3'
miRNA:   3'- aGUGugC---UGUUUGCaGUGc---GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 36263 0.67 0.978685
Target:  5'- -gGCGCGAUcugccgaagagugGAccACGUCuuCGCGGCGCg -3'
miRNA:   3'- agUGUGCUG-------------UU--UGCAGu-GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 112981 0.67 0.976528
Target:  5'- aUACGCuGCGcGGCGUCAC-CAGgGCCc -3'
miRNA:   3'- aGUGUGcUGU-UUGCAGUGcGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 134319 0.67 0.976528
Target:  5'- aCACAgGACGGcucaguAgGUCGCaugauaauagGCAGCGCUa -3'
miRNA:   3'- aGUGUgCUGUU------UgCAGUG----------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 114647 0.67 0.973949
Target:  5'- -gGCACaGACGAACGagCACGCuagcuuuccAGaCGCCu -3'
miRNA:   3'- agUGUG-CUGUUUGCa-GUGCG---------UC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 74287 0.67 0.973949
Target:  5'- uUCGcCGCGAUcu-CGUaccUGCGGCGCCa -3'
miRNA:   3'- -AGU-GUGCUGuuuGCAgu-GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 79625 0.67 0.976528
Target:  5'- cCACGCG-CAAcggcccauaaaaGCGcauaguUCGCGCcGCGCCu -3'
miRNA:   3'- aGUGUGCuGUU------------UGC------AGUGCGuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.