miRNA display CGI


Results 101 - 120 of 451 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 159057 0.67 0.981117
Target:  5'- aCGCAgauCGGCGGcgGUCGaccaagggccCGCAGCGCCc -3'
miRNA:   3'- aGUGU---GCUGUUugCAGU----------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 150984 0.67 0.981117
Target:  5'- cUCGCgaguggcgGCGACGGgccGCGUguccgaugCGCGCuacAGCGCCa -3'
miRNA:   3'- -AGUG--------UGCUGUU---UGCA--------GUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 134319 0.67 0.976528
Target:  5'- aCACAgGACGGcucaguAgGUCGCaugauaauagGCAGCGCUa -3'
miRNA:   3'- aGUGUgCUGUU------UgCAGUG----------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 16485 0.67 0.97368
Target:  5'- -gGgGCGACGAgucacauGCGUCAUuCGGCGCg -3'
miRNA:   3'- agUgUGCUGUU-------UGCAGUGcGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 36510 0.67 0.97368
Target:  5'- gCGCGCGGCcucgacgAGGCGg-GCGCAGgaGCCa -3'
miRNA:   3'- aGUGUGCUG-------UUUGCagUGCGUCg-CGG- -5'
24382 3' -52.3 NC_005264.1 + 158132 0.67 0.97117
Target:  5'- gCGuCugGACcAGCugcuGUCguggACGCGGCGCCa -3'
miRNA:   3'- aGU-GugCUGuUUG----CAG----UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 6671 0.67 0.97117
Target:  5'- cCACGCcGCAAA-GcCGCGCAuauGCGCCc -3'
miRNA:   3'- aGUGUGcUGUUUgCaGUGCGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 117901 0.67 0.976279
Target:  5'- gUCACGCGcGCAAcgggcccGCGguuCGCuuGCGCCg -3'
miRNA:   3'- -AGUGUGC-UGUU-------UGCaguGCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 32781 0.67 0.975004
Target:  5'- aUCGcCACGGCAgcGACGgucuggccgcaaccaUCAucgcggaagccUGCGGCGCCg -3'
miRNA:   3'- -AGU-GUGCUGU--UUGC---------------AGU-----------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 59669 0.67 0.975004
Target:  5'- -aGCACGucuuggaugcuuaacGCAAAC-UUACGCuuuGCGCCg -3'
miRNA:   3'- agUGUGC---------------UGUUUGcAGUGCGu--CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 124656 0.67 0.973949
Target:  5'- cCGCGCGACgcuAggUGUCcccacaGCGCGGCGgUa -3'
miRNA:   3'- aGUGUGCUG---UuuGCAG------UGCGUCGCgG- -5'
24382 3' -52.3 NC_005264.1 + 128931 0.67 0.973949
Target:  5'- cCugGCGGCAGAa---AgGCGGCGCUa -3'
miRNA:   3'- aGugUGCUGUUUgcagUgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 114647 0.67 0.973949
Target:  5'- -gGCACaGACGAACGagCACGCuagcuuuccAGaCGCCu -3'
miRNA:   3'- agUGUG-CUGUUUGCa-GUGCG---------UC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 27026 0.67 0.976528
Target:  5'- uUCACAgGAgGcucuccacuGugGaaaCGCGUAGCGCCa -3'
miRNA:   3'- -AGUGUgCUgU---------UugCa--GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 74287 0.67 0.973949
Target:  5'- uUCGcCGCGAUcu-CGUaccUGCGGCGCCa -3'
miRNA:   3'- -AGU-GUGCUGuuuGCAgu-GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 30242 0.67 0.976528
Target:  5'- -aGCGCGGCaAAGCGgugcCACGCuGCaCCg -3'
miRNA:   3'- agUGUGCUG-UUUGCa---GUGCGuCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 42021 0.67 0.976528
Target:  5'- cCACgGCGGCAGuguCGaCGCGCAcGCgGCCu -3'
miRNA:   3'- aGUG-UGCUGUUu--GCaGUGCGU-CG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 3315 0.67 0.976528
Target:  5'- aUCGCGCGccguGCAAGCGgagCGagaGUAgucGCGCCa -3'
miRNA:   3'- -AGUGUGC----UGUUUGCa--GUg--CGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 119156 0.67 0.981117
Target:  5'- cCGCucccCGGCGgccgccuuAACGccggCGCGCAGCGCg -3'
miRNA:   3'- aGUGu---GCUGU--------UUGCa---GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 134729 0.67 0.981117
Target:  5'- uUCAuagcCACGAUAGGCG-C-CGguGCGCa -3'
miRNA:   3'- -AGU----GUGCUGUUUGCaGuGCguCGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.