miRNA display CGI


Results 81 - 100 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 119650 0.73 0.781884
Target:  5'- cCGC-CGGCccGCGUCGCagGCAGCGCg -3'
miRNA:   3'- aGUGuGCUGuuUGCAGUG--CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 81750 0.73 0.781884
Target:  5'- uUCugGCGGCAagaagcacgaGACGUgCGCGCAGCauaCCg -3'
miRNA:   3'- -AGugUGCUGU----------UUGCA-GUGCGUCGc--GG- -5'
24382 3' -52.3 NC_005264.1 + 122662 0.73 0.781884
Target:  5'- gCGCGCuGACAuuCGUCGCGaUGGcCGCCg -3'
miRNA:   3'- aGUGUG-CUGUuuGCAGUGC-GUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 58019 0.73 0.781884
Target:  5'- -gGCG-GACAGGcCGUCGUGCGGCGCCc -3'
miRNA:   3'- agUGUgCUGUUU-GCAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 72829 0.72 0.835236
Target:  5'- gCGCGCGACAAccggaaacgaGCGUCGCGCucgaucggcauaGGUGUg -3'
miRNA:   3'- aGUGUGCUGUU----------UGCAGUGCG------------UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 86379 0.72 0.835236
Target:  5'- -gACAagGACGAGCaGUUGCGCAGCGUg -3'
miRNA:   3'- agUGUg-CUGUUUG-CAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 66530 0.72 0.835236
Target:  5'- cCugACGACGAccGCGUUGCG-GGCGUCg -3'
miRNA:   3'- aGugUGCUGUU--UGCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 137296 0.72 0.82677
Target:  5'- -aGCGCGACAAGCGcCuuGUccGCGCCg -3'
miRNA:   3'- agUGUGCUGUUUGCaGugCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 48428 0.72 0.818122
Target:  5'- ----gUGAUAGACGUCGUGCAGCGCa -3'
miRNA:   3'- aguguGCUGUUUGCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 150683 0.72 0.818122
Target:  5'- -uGC-CGACAGACGagACccagcaacggGCAGCGCCg -3'
miRNA:   3'- agUGuGCUGUUUGCagUG----------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 117021 0.72 0.842694
Target:  5'- gCGCAUGACGAguacagcGCGaUCAgCGCGGCgGCCc -3'
miRNA:   3'- aGUGUGCUGUU-------UGC-AGU-GCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 17793 0.72 0.835236
Target:  5'- gUCugGCGACAuuCGUgACGUucuuGCGUCc -3'
miRNA:   3'- -AGugUGCUGUuuGCAgUGCGu---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 103066 0.72 0.843513
Target:  5'- gCGgGCGACGAgucccgcgaaGCGUCcgcguCGCAGcCGCCg -3'
miRNA:   3'- aGUgUGCUGUU----------UGCAGu----GCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 77772 0.72 0.851593
Target:  5'- aUCugACGACGcggccgcagaGACG-CAcCGCGGCGCa -3'
miRNA:   3'- -AGugUGCUGU----------UUGCaGU-GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 4755 0.72 0.851593
Target:  5'- cUCGCAUaGGCuGAUGUgcgccuucUGCGCGGCGCCg -3'
miRNA:   3'- -AGUGUG-CUGuUUGCA--------GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 122193 0.72 0.851593
Target:  5'- ---aACGGCGAcccuccGCGUCGCGaCGGCGCg -3'
miRNA:   3'- agugUGCUGUU------UGCAGUGC-GUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 42066 0.72 0.851593
Target:  5'- gCcCGCGGCGcguGGCGUCA-GCuGCGCCg -3'
miRNA:   3'- aGuGUGCUGU---UUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 53582 0.72 0.850794
Target:  5'- -gGCGCGGCuuGCGUuuuguggCACaGCAGCGCg -3'
miRNA:   3'- agUGUGCUGuuUGCA-------GUG-CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 64771 0.72 0.843513
Target:  5'- aUUugGCcGCgAAACGaucugCGCGCAGCGCCc -3'
miRNA:   3'- -AGugUGcUG-UUUGCa----GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 3166 0.72 0.851593
Target:  5'- ---aACGGCGAcccuccGCGUCGCGaCGGCGCg -3'
miRNA:   3'- agugUGCUGUU------UGCAGUGC-GUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.