miRNA display CGI


Results 41 - 60 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 87745 0.75 0.693217
Target:  5'- -aGCGCGACu-GCGUCAaGUAGCGCa -3'
miRNA:   3'- agUGUGCUGuuUGCAGUgCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 11993 0.75 0.693217
Target:  5'- -gGCACGGCAGaguacGCGUCACgaccugcgGCGGCGaCCg -3'
miRNA:   3'- agUGUGCUGUU-----UGCAGUG--------CGUCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 131020 0.75 0.693217
Target:  5'- -gGCACGGCAGaguacGCGUCACgaccugcgGCGGCGaCCg -3'
miRNA:   3'- agUGUGCUGUU-----UGCAGUG--------CGUCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 32915 0.75 0.693217
Target:  5'- cUCGauCGCG-CAGGgGUCGCGgGGCGCCg -3'
miRNA:   3'- -AGU--GUGCuGUUUgCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 99164 0.75 0.703404
Target:  5'- aCAuCGCGGgGGACGUCAcuCGCGGCGUa -3'
miRNA:   3'- aGU-GUGCUgUUUGCAGU--GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 134789 0.75 0.703404
Target:  5'- cCGCGCGcuuuuACccGGCGUCGCGC-GCGCCg -3'
miRNA:   3'- aGUGUGC-----UGu-UUGCAGUGCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 129494 0.75 0.703404
Target:  5'- aUUGCgGCGGCGcAGgGUUugGCGGCGCCg -3'
miRNA:   3'- -AGUG-UGCUGU-UUgCAGugCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 7350 0.75 0.703404
Target:  5'- uUCGCAcCGGCAAAa-UCugGCGGcCGCCg -3'
miRNA:   3'- -AGUGU-GCUGUUUgcAGugCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 21438 0.75 0.703404
Target:  5'- cUUGgGCGACAgaGACGUCACcaacuGCAGCGUCc -3'
miRNA:   3'- -AGUgUGCUGU--UUGCAGUG-----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 27702 0.74 0.723585
Target:  5'- cCugACGACGGAUGUCGCGgGGCa-- -3'
miRNA:   3'- aGugUGCUGUUUGCAGUGCgUCGcgg -5'
24382 3' -52.3 NC_005264.1 + 68766 0.74 0.723585
Target:  5'- gUCACGCGGgAcAUGUUGC-CGGCGCCa -3'
miRNA:   3'- -AGUGUGCUgUuUGCAGUGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 104713 0.74 0.73356
Target:  5'- cCAgACGGCugcgcGAgGUCGCGCagcAGCGCCg -3'
miRNA:   3'- aGUgUGCUGu----UUgCAGUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 4876 0.74 0.73356
Target:  5'- cUugGCGGCAAGCGaCACGCGGaguucgagGCCa -3'
miRNA:   3'- aGugUGCUGUUUGCaGUGCGUCg-------CGG- -5'
24382 3' -52.3 NC_005264.1 + 96592 0.74 0.73356
Target:  5'- aCACgucaACGGCAAAUuggaacccaGUCACGCGGCGUg -3'
miRNA:   3'- aGUG----UGCUGUUUG---------CAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 13423 0.74 0.743444
Target:  5'- gCGCGCGACcgccgccgccgAGACGcgaCGCgGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUG-----------UUUGCa--GUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 131980 0.74 0.743444
Target:  5'- cUCGCgACGACAGGCcgGUgGCGguGgGCCg -3'
miRNA:   3'- -AGUG-UGCUGUUUG--CAgUGCguCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 58480 0.74 0.743444
Target:  5'- cCGCGCGACAuuAACGcaugCGCGCaagAGCGCg -3'
miRNA:   3'- aGUGUGCUGU--UUGCa---GUGCG---UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 46857 0.74 0.743444
Target:  5'- gCACACGGCcuGGCGUUcaGCGUcccugucgGGCGCCg -3'
miRNA:   3'- aGUGUGCUGu-UUGCAG--UGCG--------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 132450 0.74 0.743444
Target:  5'- gCGCGCGACcgccgccgccgAGACGcgaCGCgGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUG-----------UUUGCa--GUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 59969 0.74 0.753227
Target:  5'- gUC-CAUGGCGAuuACGUguCuGCAGCGCCg -3'
miRNA:   3'- -AGuGUGCUGUU--UGCAguG-CGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.