miRNA display CGI


Results 81 - 100 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 156690 0.73 0.800316
Target:  5'- gCACGCGAUGcgcGACGggCGCGCGGC-CCu -3'
miRNA:   3'- aGUGUGCUGU---UUGCa-GUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 16063 0.73 0.809302
Target:  5'- cCGCAcCGAgAAcCGcCGCGCGGCGCUu -3'
miRNA:   3'- aGUGU-GCUgUUuGCaGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 10536 0.73 0.809302
Target:  5'- gUCGCGCGACGAACugaagaaacUUGCGCAGgCGCg -3'
miRNA:   3'- -AGUGUGCUGUUUGc--------AGUGCGUC-GCGg -5'
24382 3' -52.3 NC_005264.1 + 71855 0.73 0.809302
Target:  5'- gUCGCgGCGGCGguguuccgcGACGgCACGCGgGCGCCc -3'
miRNA:   3'- -AGUG-UGCUGU---------UUGCaGUGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 95508 0.72 0.817248
Target:  5'- uUCGCgGCGGCGAucguACGUgACGUuauggaaGGCGCCg -3'
miRNA:   3'- -AGUG-UGCUGUU----UGCAgUGCG-------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 150683 0.72 0.818122
Target:  5'- -uGC-CGACAGACGagACccagcaacggGCAGCGCCg -3'
miRNA:   3'- agUGuGCUGUUUGCagUG----------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 48428 0.72 0.818122
Target:  5'- ----gUGAUAGACGUCGUGCAGCGCa -3'
miRNA:   3'- aguguGCUGUUUGCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 9383 0.72 0.82677
Target:  5'- -aGCGCGAUuauGAgGUCcucgUGCAGCGCCa -3'
miRNA:   3'- agUGUGCUGu--UUgCAGu---GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 24503 0.72 0.82677
Target:  5'- uUCGgGCGcCu--UGUCGCGCAcGCGCCa -3'
miRNA:   3'- -AGUgUGCuGuuuGCAGUGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 137296 0.72 0.82677
Target:  5'- -aGCGCGACAAGCGcCuuGUccGCGCCg -3'
miRNA:   3'- agUGUGCUGUUUGCaGugCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 112024 0.72 0.82677
Target:  5'- cUACACG-CAAACcugCGCGC-GCGCCg -3'
miRNA:   3'- aGUGUGCuGUUUGca-GUGCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 17793 0.72 0.835236
Target:  5'- gUCugGCGACAuuCGUgACGUucuuGCGUCc -3'
miRNA:   3'- -AGugUGCUGUuuGCAgUGCGu---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 87613 0.72 0.835236
Target:  5'- aUACAaGACGGcCGcCGCGCAGgGCCg -3'
miRNA:   3'- aGUGUgCUGUUuGCaGUGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 66530 0.72 0.835236
Target:  5'- cCugACGACGAccGCGUUGCG-GGCGUCg -3'
miRNA:   3'- aGugUGCUGUU--UGCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 72829 0.72 0.835236
Target:  5'- gCGCGCGACAAccggaaacgaGCGUCGCGCucgaucggcauaGGUGUg -3'
miRNA:   3'- aGUGUGCUGUU----------UGCAGUGCG------------UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 86379 0.72 0.835236
Target:  5'- -gACAagGACGAGCaGUUGCGCAGCGUg -3'
miRNA:   3'- agUGUg-CUGUUUG-CAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 117021 0.72 0.842694
Target:  5'- gCGCAUGACGAguacagcGCGaUCAgCGCGGCgGCCc -3'
miRNA:   3'- aGUGUGCUGUU-------UGC-AGU-GCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 103066 0.72 0.843513
Target:  5'- gCGgGCGACGAgucccgcgaaGCGUCcgcguCGCAGcCGCCg -3'
miRNA:   3'- aGUgUGCUGUU----------UGCAGu----GCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 64771 0.72 0.843513
Target:  5'- aUUugGCcGCgAAACGaucugCGCGCAGCGCCc -3'
miRNA:   3'- -AGugUGcUG-UUUGCa----GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 53582 0.72 0.850794
Target:  5'- -gGCGCGGCuuGCGUuuuguggCACaGCAGCGCg -3'
miRNA:   3'- agUGUGCUGuuUGCA-------GUG-CGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.