miRNA display CGI


Results 101 - 120 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 3166 0.72 0.851593
Target:  5'- ---aACGGCGAcccuccGCGUCGCGaCGGCGCg -3'
miRNA:   3'- agugUGCUGUU------UGCAGUGC-GUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 83086 0.72 0.851593
Target:  5'- -gACACGACGgaacAACGUaGCGCAGguguaCGCCg -3'
miRNA:   3'- agUGUGCUGU----UUGCAgUGCGUC-----GCGG- -5'
24382 3' -52.3 NC_005264.1 + 42066 0.72 0.851593
Target:  5'- gCcCGCGGCGcguGGCGUCA-GCuGCGCCg -3'
miRNA:   3'- aGuGUGCUGU---UUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 122193 0.72 0.851593
Target:  5'- ---aACGGCGAcccuccGCGUCGCGaCGGCGCg -3'
miRNA:   3'- agugUGCUGUU------UGCAGUGC-GUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 4755 0.72 0.851593
Target:  5'- cUCGCAUaGGCuGAUGUgcgccuucUGCGCGGCGCCg -3'
miRNA:   3'- -AGUGUG-CUGuUUGCA--------GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 77772 0.72 0.851593
Target:  5'- aUCugACGACGcggccgcagaGACG-CAcCGCGGCGCa -3'
miRNA:   3'- -AGugUGCUGU----------UUGCaGU-GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 142903 0.72 0.851593
Target:  5'- gUCACgGCGACGAuGCGUCcucgagguacugGCaCGGCGCCa -3'
miRNA:   3'- -AGUG-UGCUGUU-UGCAG------------UGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 86581 0.72 0.851593
Target:  5'- cUCugGCGAUcuGCGUgagaCACGCGGuCGUCg -3'
miRNA:   3'- -AGugUGCUGuuUGCA----GUGCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 84322 0.71 0.859468
Target:  5'- aCGCcaGCGGC--GCGUacccaGCGCGGUGCCa -3'
miRNA:   3'- aGUG--UGCUGuuUGCAg----UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 112227 0.71 0.859468
Target:  5'- aUguCAUGACAAA-GUCGCGaacgucCAGCGCCg -3'
miRNA:   3'- -AguGUGCUGUUUgCAGUGC------GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 15031 0.71 0.864856
Target:  5'- cCAgACGACAAGgccuaccucaccucCGUCGCGCAguucGCGCg -3'
miRNA:   3'- aGUgUGCUGUUU--------------GCAGUGCGU----CGCGg -5'
24382 3' -52.3 NC_005264.1 + 67310 0.71 0.867133
Target:  5'- aUCGCgGCGGCGccuuccauAACGUCACGUAcgauCGCCg -3'
miRNA:   3'- -AGUG-UGCUGU--------UUGCAGUGCGUc---GCGG- -5'
24382 3' -52.3 NC_005264.1 + 122043 0.71 0.867133
Target:  5'- cCcCGCGGCAAGCGgcucCGCucuCGGCGCCg -3'
miRNA:   3'- aGuGUGCUGUUUGCa---GUGc--GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 133498 0.71 0.867133
Target:  5'- gUACcCGGCAGACGUCGuagcCGCaggaGGCGCUg -3'
miRNA:   3'- aGUGuGCUGUUUGCAGU----GCG----UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 113380 0.71 0.867133
Target:  5'- aUACGCGGCGAgugaGCGcgCACauucuaGCAGCGCUg -3'
miRNA:   3'- aGUGUGCUGUU----UGCa-GUG------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 1177 0.71 0.874581
Target:  5'- gCGCGCGAUggGgG-UACGCAGCGgaCCg -3'
miRNA:   3'- aGUGUGCUGuuUgCaGUGCGUCGC--GG- -5'
24382 3' -52.3 NC_005264.1 + 146359 0.71 0.874581
Target:  5'- aCGCAUGugAcuCGUCGCccccCAGCGCUg -3'
miRNA:   3'- aGUGUGCugUuuGCAGUGc---GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 120204 0.71 0.874581
Target:  5'- gCGCGCGAUggGgG-UACGCAGCGgaCCg -3'
miRNA:   3'- aGUGUGCUGuuUgCaGUGCGUCGC--GG- -5'
24382 3' -52.3 NC_005264.1 + 13793 0.71 0.877498
Target:  5'- aCAUugGAgAGuugggcguuugcgguACGUCACGCAGUcguuGCCu -3'
miRNA:   3'- aGUGugCUgUU---------------UGCAGUGCGUCG----CGG- -5'
24382 3' -52.3 NC_005264.1 + 77886 0.71 0.881806
Target:  5'- cCugGCcGCAAGCGagCACcCGGCGCCa -3'
miRNA:   3'- aGugUGcUGUUUGCa-GUGcGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.