miRNA display CGI


Results 121 - 140 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 103368 0.71 0.881806
Target:  5'- gUACACGACGGugGUgAcCGUAG-GCCu -3'
miRNA:   3'- aGUGUGCUGUUugCAgU-GCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 77886 0.71 0.881806
Target:  5'- cCugGCcGCAAGCGagCACcCGGCGCCa -3'
miRNA:   3'- aGugUGcUGUUUGCa-GUGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 54340 0.71 0.884633
Target:  5'- gCGCGCGGCGuuuAuggcgagccuuagaaGCGUCGCGCGGCcaCCg -3'
miRNA:   3'- aGUGUGCUGU---U---------------UGCAGUGCGUCGc-GG- -5'
24382 3' -52.3 NC_005264.1 + 57990 0.71 0.888804
Target:  5'- cCGCGCGGCGGcCGUgGCuCAGCgGCCc -3'
miRNA:   3'- aGUGUGCUGUUuGCAgUGcGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 6311 0.71 0.888804
Target:  5'- cUUGCGCGGCGAgGCuUCGCGUGGCGUa -3'
miRNA:   3'- -AGUGUGCUGUU-UGcAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 77717 0.71 0.888804
Target:  5'- aCGCGUGGCAuuUGUCuCGCAauGCGCCg -3'
miRNA:   3'- aGUGUGCUGUuuGCAGuGCGU--CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 100564 0.71 0.888804
Target:  5'- aUCGCGgGACAAGgG-CGCaaAGCGCCg -3'
miRNA:   3'- -AGUGUgCUGUUUgCaGUGcgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 5418 0.71 0.888804
Target:  5'- gUACGCGGCAucugucucGGCGUCGcCGCucuCGCCg -3'
miRNA:   3'- aGUGUGCUGU--------UUGCAGU-GCGuc-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 126076 0.71 0.888804
Target:  5'- -uGCGCG-CAAGCG--GCGaCGGCGCCg -3'
miRNA:   3'- agUGUGCuGUUUGCagUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 7930 0.71 0.888804
Target:  5'- gCGCGCGucCAcGCGUCGuccacggcCGCGGCGUCu -3'
miRNA:   3'- aGUGUGCu-GUuUGCAGU--------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 143148 0.71 0.888804
Target:  5'- aCGCACGGCAcugguuacaguuAACGUagUugGCgAGUGCCc -3'
miRNA:   3'- aGUGUGCUGU------------UUGCA--GugCG-UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 124445 0.71 0.888804
Target:  5'- gUACGCGGCAucugucucGGCGUCGcCGCucuCGCCg -3'
miRNA:   3'- aGUGUGCUGU--------UUGCAGU-GCGuc-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 139868 0.71 0.888804
Target:  5'- gCACGgGGCGAACGuacggUCACGUcuaAGgGCCa -3'
miRNA:   3'- aGUGUgCUGUUUGC-----AGUGCG---UCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 45544 0.71 0.888804
Target:  5'- gCACGCGGaGAGCGgcaUCGCGCAcGCGUa -3'
miRNA:   3'- aGUGUGCUgUUUGC---AGUGCGU-CGCGg -5'
24382 3' -52.3 NC_005264.1 + 7049 0.71 0.888804
Target:  5'- -uGCGCG-CAAGCG--GCGaCGGCGCCg -3'
miRNA:   3'- agUGUGCuGUUUGCagUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 49431 0.7 0.892892
Target:  5'- gCACAUGGagcucucugcCGUCGCGCAGCucGCCu -3'
miRNA:   3'- aGUGUGCUguuu------GCAGUGCGUCG--CGG- -5'
24382 3' -52.3 NC_005264.1 + 64428 0.7 0.893565
Target:  5'- -gGCACGGCGauGACGUCugcCGCGGCucuaacucccuguaGCCu -3'
miRNA:   3'- agUGUGCUGU--UUGCAGu--GCGUCG--------------CGG- -5'
24382 3' -52.3 NC_005264.1 + 94375 0.7 0.893565
Target:  5'- cUCAC-CGACGAAguggugucgucccuCGUCuaugaucaggcCGCGGCGCCg -3'
miRNA:   3'- -AGUGuGCUGUUU--------------GCAGu----------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 32574 0.7 0.895571
Target:  5'- cCGC-CG-C-AACGUCGCGCAcccGCGCCc -3'
miRNA:   3'- aGUGuGCuGuUUGCAGUGCGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 53262 0.7 0.895571
Target:  5'- gCGCGugucUGGCuuGCuGUCcCGCGGCGCCg -3'
miRNA:   3'- aGUGU----GCUGuuUG-CAGuGCGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.