miRNA display CGI


Results 61 - 80 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 96229 0.66 0.984999
Target:  5'- --cCGCGACGGcgcCGgcaACGCGGCGCa -3'
miRNA:   3'- aguGUGCUGUUu--GCag-UGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 92473 0.66 0.984821
Target:  5'- cUCACuuuUGACGGguacacuGCgGUgGCGguGCGCCu -3'
miRNA:   3'- -AGUGu--GCUGUU-------UG-CAgUGCguCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 123407 0.66 0.984459
Target:  5'- cCGCccCGGCAaaaccGAUGUCuccggcgcugagcaGCGCAGUGCCc -3'
miRNA:   3'- aGUGu-GCUGU-----UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 4380 0.66 0.984459
Target:  5'- cCGCccCGGCAaaaccGAUGUCuccggcgcugagcaGCGCAGUGCCc -3'
miRNA:   3'- aGUGu-GCUGU-----UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 37570 0.66 0.983142
Target:  5'- aC-CGCGACGGAggcggcaaGUCuCGCGGCgGCCg -3'
miRNA:   3'- aGuGUGCUGUUUg-------CAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 158065 0.66 0.983142
Target:  5'- -uGCGCGAacGGCGcCGCGCagaaGGCGCa -3'
miRNA:   3'- agUGUGCUguUUGCaGUGCG----UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 156597 0.66 0.983142
Target:  5'- aC-CGCGACGGAggcggcaaGUCuCGCGGCgGCCg -3'
miRNA:   3'- aGuGUGCUGUUUg-------CAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 64130 0.66 0.983142
Target:  5'- gUCGC-CGAuCAGGC-UCGCcaCGGCGCCg -3'
miRNA:   3'- -AGUGuGCU-GUUUGcAGUGc-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 45175 0.66 0.983142
Target:  5'- -aGCGCGGCAgcgAACgGUCugGCAGUaacaGCg -3'
miRNA:   3'- agUGUGCUGU---UUG-CAGugCGUCG----CGg -5'
24382 3' -52.3 NC_005264.1 + 4664 0.66 0.983142
Target:  5'- -aGCACGAuCAGggaauaccuGCGUCGgggcgaGUGGCGCCg -3'
miRNA:   3'- agUGUGCU-GUU---------UGCAGUg-----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 123691 0.66 0.983142
Target:  5'- -aGCACGAuCAGggaauaccuGCGUCGgggcgaGUGGCGCCg -3'
miRNA:   3'- agUGUGCU-GUU---------UGCAGUg-----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 38524 0.66 0.983142
Target:  5'- --uCugGACAGGauuagCGCGCAGUGUCa -3'
miRNA:   3'- aguGugCUGUUUgca--GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 107912 0.66 0.983142
Target:  5'- cCACuCG-CAGcCGuUCGCcaGCAGCGCCg -3'
miRNA:   3'- aGUGuGCuGUUuGC-AGUG--CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 98690 0.66 0.983142
Target:  5'- gCACAcCGGC---CGgauCGCGGCGCCg -3'
miRNA:   3'- aGUGU-GCUGuuuGCaguGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 134969 0.66 0.983142
Target:  5'- -gACACGACAAAaaggCG-GCGGCGCa -3'
miRNA:   3'- agUGUGCUGUUUgca-GUgCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 144988 0.66 0.983142
Target:  5'- cUCACGCGGuCGAACa--GCGC-GCGCg -3'
miRNA:   3'- -AGUGUGCU-GUUUGcagUGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 14531 0.66 0.983142
Target:  5'- cCAUACGaACAccGGCGcgCACGC-GCGCg -3'
miRNA:   3'- aGUGUGC-UGU--UUGCa-GUGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 96003 0.66 0.983142
Target:  5'- gUCGgGCGAC-GGCGUCcgacaagaACGCAGUaacuauagacGCCg -3'
miRNA:   3'- -AGUgUGCUGuUUGCAG--------UGCGUCG----------CGG- -5'
24382 3' -52.3 NC_005264.1 + 105998 0.66 0.983142
Target:  5'- cUCugGCGGCGAuaccgacucaaACGaugaUCAUGCGcCGCCg -3'
miRNA:   3'- -AGugUGCUGUU-----------UGC----AGUGCGUcGCGG- -5'
24382 3' -52.3 NC_005264.1 + 136727 0.66 0.983142
Target:  5'- cCGCGCcACGAGC--CGCGCGGUgGCCa -3'
miRNA:   3'- aGUGUGcUGUUUGcaGUGCGUCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.