miRNA display CGI


Results 81 - 100 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 25214 0.66 0.983142
Target:  5'- gCGCAC-ACGGugGcCAgGgCAGUGCCg -3'
miRNA:   3'- aGUGUGcUGUUugCaGUgC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 82352 0.66 0.982947
Target:  5'- aCGCACGugugccagGCAGgcGCGUCgauccggugccggGCGCAGgGCUa -3'
miRNA:   3'- aGUGUGC--------UGUU--UGCAG-------------UGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 148054 0.66 0.982947
Target:  5'- aCACAuaaagcuuuucguUGGCGAAUG-CG-GCGGCGCCa -3'
miRNA:   3'- aGUGU-------------GCUGUUUGCaGUgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 124769 0.66 0.982947
Target:  5'- -aGCACGGCGGGuaggcauUGUgAgaGCGGCGCCu -3'
miRNA:   3'- agUGUGCUGUUU-------GCAgUg-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 131685 0.66 0.982947
Target:  5'- -gGCACGucggcucGCAAGCGUagcgugggccUGCGCGGCGUUg -3'
miRNA:   3'- agUGUGC-------UGUUUGCA----------GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 54391 0.66 0.982751
Target:  5'- cCGCGCgGAUAAuaaagaagucguUGUUGCGCGGCGCg -3'
miRNA:   3'- aGUGUG-CUGUUu-----------GCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 46426 0.66 0.982553
Target:  5'- -uGCACGcCGcccugcgcucGACGUCggccugcggcuuuuGCGCGGCGCUc -3'
miRNA:   3'- agUGUGCuGU----------UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 95901 0.67 0.981117
Target:  5'- aCGCugGu---ACGUUGCuuaaagugguGCAGCGCCg -3'
miRNA:   3'- aGUGugCuguuUGCAGUG----------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 155774 0.67 0.981117
Target:  5'- -aGCGCGAC-GGCGcCgGC-CGGCGCCg -3'
miRNA:   3'- agUGUGCUGuUUGCaG-UGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 119156 0.67 0.981117
Target:  5'- cCGCucccCGGCGgccgccuuAACGccggCGCGCAGCGCg -3'
miRNA:   3'- aGUGu---GCUGU--------UUGCa---GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 150984 0.67 0.981117
Target:  5'- cUCGCgaguggcgGCGACGGgccGCGUguccgaugCGCGCuacAGCGCCa -3'
miRNA:   3'- -AGUG--------UGCUGUU---UGCA--------GUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 36748 0.67 0.981117
Target:  5'- -aGCGCGAC-GGCGcCgGC-CGGCGCCg -3'
miRNA:   3'- agUGUGCUGuUUGCaG-UGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 129 0.67 0.981117
Target:  5'- cCGCucccCGGCGgccgccuuAACGccggCGCGCAGCGCg -3'
miRNA:   3'- aGUGu---GCUGU--------UUGCa---GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 144414 0.67 0.981117
Target:  5'- cCcCGCGcCGAGCGagagggCGCGCcuGCGCCg -3'
miRNA:   3'- aGuGUGCuGUUUGCa-----GUGCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 119219 0.67 0.981117
Target:  5'- aCGCGCGACcacgcGAgGUUugGC-GCGCa -3'
miRNA:   3'- aGUGUGCUGu----UUgCAGugCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 141962 0.67 0.981117
Target:  5'- -gAgACGACcaagaccAGAgucuuucuccuuuuaGUCGCGCAGCGCCg -3'
miRNA:   3'- agUgUGCUG-------UUUg--------------CAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 87595 0.67 0.981117
Target:  5'- gCGCuugcCGGCAAACGcggacgacCugGCcGCGCCa -3'
miRNA:   3'- aGUGu---GCUGUUUGCa-------GugCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 108103 0.67 0.981117
Target:  5'- uUCGguCGAUGAGuucCGUcCACGUgAGCGCCa -3'
miRNA:   3'- -AGUguGCUGUUU---GCA-GUGCG-UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 134729 0.67 0.981117
Target:  5'- uUCAuagcCACGAUAGGCG-C-CGguGCGCa -3'
miRNA:   3'- -AGU----GUGCUGUUUGCaGuGCguCGCGg -5'
24382 3' -52.3 NC_005264.1 + 159057 0.67 0.981117
Target:  5'- aCGCAgauCGGCGGcgGUCGaccaagggccCGCAGCGCCc -3'
miRNA:   3'- aGUGU---GCUGUUugCAGU----------GCGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.