miRNA display CGI


Results 101 - 120 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 119156 0.67 0.981117
Target:  5'- cCGCucccCGGCGgccgccuuAACGccggCGCGCAGCGCg -3'
miRNA:   3'- aGUGu---GCUGU--------UUGCa---GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 155774 0.67 0.981117
Target:  5'- -aGCGCGAC-GGCGcCgGC-CGGCGCCg -3'
miRNA:   3'- agUGUGCUGuUUGCaG-UGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 55621 0.67 0.981117
Target:  5'- gCugGCGcCGAAUGcCAacCGCGcGCGCCg -3'
miRNA:   3'- aGugUGCuGUUUGCaGU--GCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 114615 0.67 0.981117
Target:  5'- cCGCAggcaGACAugcccagcAGCGUCACcaCGGUGCCa -3'
miRNA:   3'- aGUGUg---CUGU--------UUGCAGUGc-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 133376 0.67 0.981117
Target:  5'- -gACuCGGCGAGaGUCAuCGCGGCGgCg -3'
miRNA:   3'- agUGuGCUGUUUgCAGU-GCGUCGCgG- -5'
24382 3' -52.3 NC_005264.1 + 147798 0.67 0.981117
Target:  5'- -uGCGCGACGGAgGUgAgGUAG-GCCu -3'
miRNA:   3'- agUGUGCUGUUUgCAgUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 74232 0.67 0.981117
Target:  5'- cUCGCACGu--AGCGcgCugGCcGCGCUc -3'
miRNA:   3'- -AGUGUGCuguUUGCa-GugCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 121504 0.67 0.980905
Target:  5'- uUCGCGgcugcuuCGACGAugGUCG-GCGG-GCCu -3'
miRNA:   3'- -AGUGU-------GCUGUUugCAGUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 5547 0.67 0.980905
Target:  5'- gUC-CGgGACuGACGUCACcgacagcaccgcgGaCAGCGCCu -3'
miRNA:   3'- -AGuGUgCUGuUUGCAGUG-------------C-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 2477 0.67 0.980905
Target:  5'- uUCGCGgcugcuuCGACGAugGUCG-GCGG-GCCu -3'
miRNA:   3'- -AGUGU-------GCUGUUugCAGUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 124574 0.67 0.980905
Target:  5'- gUC-CGgGACuGACGUCACcgacagcaccgcgGaCAGCGCCu -3'
miRNA:   3'- -AGuGUgCUGuUUGCAGUG-------------C-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 52337 0.67 0.980905
Target:  5'- gUCGCugGGCGGgcugccccacaacACGUCcgggcuaauuCGUAGCGCg -3'
miRNA:   3'- -AGUGugCUGUU-------------UGCAGu---------GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 101338 0.67 0.980691
Target:  5'- aCGCGCGGCGcuagccgagaccGCGgggCGCGuCGGCGCg -3'
miRNA:   3'- aGUGUGCUGUu-----------UGCa--GUGC-GUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 65482 0.67 0.980475
Target:  5'- cUCGCaugcacgcaaaaaaGCGGCGGACGUCuccACGCacauGGCGUa -3'
miRNA:   3'- -AGUG--------------UGCUGUUUGCAG---UGCG----UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 66512 0.67 0.980475
Target:  5'- gCGCuCGACGAGCucgcuuUCGCGCAGUacagcaacgcggacGCCg -3'
miRNA:   3'- aGUGuGCUGUUUGc-----AGUGCGUCG--------------CGG- -5'
24382 3' -52.3 NC_005264.1 + 33930 0.67 0.980258
Target:  5'- cCACACGaACAugagcccgccguCGUCGaggacgaGCGGUGCCg -3'
miRNA:   3'- aGUGUGC-UGUuu----------GCAGUg------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 33213 0.67 0.979817
Target:  5'- gCugGCGGCGcucGGCGUCuacucgagaagcuucGCcgccgcgccGCAGCGCCu -3'
miRNA:   3'- aGugUGCUGU---UUGCAG---------------UG---------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 145422 0.67 0.978915
Target:  5'- aUACACuaGGCcuAGACGUCACGCcGCaCCu -3'
miRNA:   3'- aGUGUG--CUG--UUUGCAGUGCGuCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 136931 0.67 0.978915
Target:  5'- cCGCuucgUGGCGGACaagaagGCGCAGCGCCc -3'
miRNA:   3'- aGUGu---GCUGUUUGcag---UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 95357 0.67 0.978915
Target:  5'- -gGC-CGACGGGCGgCGCGUGcCGCCa -3'
miRNA:   3'- agUGuGCUGUUUGCaGUGCGUcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.