miRNA display CGI


Results 41 - 60 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 13793 0.71 0.877498
Target:  5'- aCAUugGAgAGuugggcguuugcgguACGUCACGCAGUcguuGCCu -3'
miRNA:   3'- aGUGugCUgUU---------------UGCAGUGCGUCG----CGG- -5'
24382 3' -52.3 NC_005264.1 + 13957 0.73 0.791173
Target:  5'- cCACGCGGCGAcgaggagacgaGCGagACGCGGgGUCg -3'
miRNA:   3'- aGUGUGCUGUU-----------UGCagUGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 14380 0.78 0.499296
Target:  5'- cCGC-CGACGAAacgguuCGUCGCGCAGCGUg -3'
miRNA:   3'- aGUGuGCUGUUU------GCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 14531 0.66 0.983142
Target:  5'- cCAUACGaACAccGGCGcgCACGC-GCGCg -3'
miRNA:   3'- aGUGUGC-UGU--UUGCa-GUGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 14930 0.68 0.964985
Target:  5'- -gACAaGAUggaAGGCGUCuACGCGGCaGCCg -3'
miRNA:   3'- agUGUgCUG---UUUGCAG-UGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 15031 0.71 0.864856
Target:  5'- cCAgACGACAAGgccuaccucaccucCGUCGCGCAguucGCGCg -3'
miRNA:   3'- aGUgUGCUGUUU--------------GCAGUGCGU----CGCGg -5'
24382 3' -52.3 NC_005264.1 + 16006 0.68 0.954053
Target:  5'- gCAuCAUGGCAGGCGaCGacCGCcGCGCCu -3'
miRNA:   3'- aGU-GUGCUGUUUGCaGU--GCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 16063 0.73 0.809302
Target:  5'- cCGCAcCGAgAAcCGcCGCGCGGCGCUu -3'
miRNA:   3'- aGUGU-GCUgUUuGCaGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 16485 0.67 0.97368
Target:  5'- -gGgGCGACGAgucacauGCGUCAUuCGGCGCg -3'
miRNA:   3'- agUgUGCUGUU-------UGCAGUGcGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 16878 0.68 0.959409
Target:  5'- uUCGCGcCGGCGAAgGUCGCaGCAGagaaauucccgucgGCCg -3'
miRNA:   3'- -AGUGU-GCUGUUUgCAGUG-CGUCg-------------CGG- -5'
24382 3' -52.3 NC_005264.1 + 17024 0.73 0.781884
Target:  5'- -aAgGCGGCGAuCGUCGCcaGCAGCGCg -3'
miRNA:   3'- agUgUGCUGUUuGCAGUG--CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 17281 0.66 0.989643
Target:  5'- gCGCugGGCAAACaugguggccacgGUUAcCGCuAGCGCg -3'
miRNA:   3'- aGUGugCUGUUUG------------CAGU-GCG-UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 17332 0.66 0.984999
Target:  5'- gUUGC-CGugG-ACGUC-UGCAGUGCCu -3'
miRNA:   3'- -AGUGuGCugUuUGCAGuGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 17793 0.72 0.835236
Target:  5'- gUCugGCGACAuuCGUgACGUucuuGCGUCc -3'
miRNA:   3'- -AGugUGCUGUuuGCAgUGCGu---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 18931 0.7 0.913847
Target:  5'- cCugGCGACGAgaaACGUCccacaaucgacguGCGCccgccGCGCCg -3'
miRNA:   3'- aGugUGCUGUU---UGCAG-------------UGCGu----CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 19407 0.66 0.986696
Target:  5'- -gACAUGAUggGgGagGCGaGGCGCCg -3'
miRNA:   3'- agUGUGCUGuuUgCagUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 20138 0.67 0.97117
Target:  5'- gCGgGCaGGCGAugG-CGCGCcgccGGCGCCc -3'
miRNA:   3'- aGUgUG-CUGUUugCaGUGCG----UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 20333 0.69 0.949947
Target:  5'- gCAC-CGGCAAGCaGgaaaCGCGCcGUGCCa -3'
miRNA:   3'- aGUGuGCUGUUUG-Ca---GUGCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 20757 0.69 0.945604
Target:  5'- cCugGCGACcacagcAACGUCAUG-AGCGCa -3'
miRNA:   3'- aGugUGCUGu-----UUGCAGUGCgUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 21233 0.68 0.964985
Target:  5'- aC-CGCGAUuuGGACGUCAUGagGGCGCa -3'
miRNA:   3'- aGuGUGCUG--UUUGCAGUGCg-UCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.