miRNA display CGI


Results 81 - 100 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 31468 0.7 0.902101
Target:  5'- gUCGC-CGAUggGCGUggAUGguGCGCCc -3'
miRNA:   3'- -AGUGuGCUGuuUGCAg-UGCguCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 31494 0.68 0.954053
Target:  5'- cCAguCACGAgGAAgGUCAgGCGGCuCCa -3'
miRNA:   3'- aGU--GUGCUgUUUgCAGUgCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 31604 0.68 0.964985
Target:  5'- cUCugGCGA--GGCGgCGCGCAuCGCCc -3'
miRNA:   3'- -AGugUGCUguUUGCaGUGCGUcGCGG- -5'
24382 3' -52.3 NC_005264.1 + 31957 0.67 0.981117
Target:  5'- cUCGCgaguggcgGCGACGGgccGCGUguccgaugCGCGCuacAGCGCCa -3'
miRNA:   3'- -AGUG--------UGCUGUU---UGCA--------GUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 32300 0.68 0.961567
Target:  5'- aCACGCGcCGcGACGcuUCGCGCAGgucuaucuCGCCg -3'
miRNA:   3'- aGUGUGCuGU-UUGC--AGUGCGUC--------GCGG- -5'
24382 3' -52.3 NC_005264.1 + 32574 0.7 0.895571
Target:  5'- cCGC-CG-C-AACGUCGCGCAcccGCGCCc -3'
miRNA:   3'- aGUGuGCuGuUUGCAGUGCGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 32781 0.67 0.975004
Target:  5'- aUCGcCACGGCAgcGACGgucuggccgcaaccaUCAucgcggaagccUGCGGCGCCg -3'
miRNA:   3'- -AGU-GUGCUGU--UUGC---------------AGU-----------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 32915 0.75 0.693217
Target:  5'- cUCGauCGCG-CAGGgGUCGCGgGGCGCCg -3'
miRNA:   3'- -AGU--GUGCuGUUUgCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 32977 0.66 0.986696
Target:  5'- -gACACG-CGGGC-UCGCGCAuauCGCCa -3'
miRNA:   3'- agUGUGCuGUUUGcAGUGCGUc--GCGG- -5'
24382 3' -52.3 NC_005264.1 + 33046 0.68 0.966291
Target:  5'- cUACGCGACucAgcuaagauaaucugcGACGUCGCGguGC-CCg -3'
miRNA:   3'- aGUGUGCUG--U---------------UUGCAGUGCguCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 33213 0.67 0.979817
Target:  5'- gCugGCGGCGcucGGCGUCuacucgagaagcuucGCcgccgcgccGCAGCGCCu -3'
miRNA:   3'- aGugUGCUGU---UUGCAG---------------UG---------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 33269 0.7 0.908392
Target:  5'- aCGCGCGAUccGCGccccugaGgGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUGuuUGCag-----UgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 33294 0.66 0.987944
Target:  5'- cCACGCGGCGAcgccuaagcccacGCccgcagugguuccGUCGCcucCGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUU-------------UG-------------CAGUGc--GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 33930 0.67 0.980258
Target:  5'- cCACACGaACAugagcccgccguCGUCGaggacgaGCGGUGCCg -3'
miRNA:   3'- aGUGUGC-UGUuu----------GCAGUg------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 35355 0.7 0.918531
Target:  5'- aCGaGCGACGAACucgagcugaaaccaGUUGCGcCGGCGCCa -3'
miRNA:   3'- aGUgUGCUGUUUG--------------CAGUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 35667 0.69 0.925807
Target:  5'- gCGCACGAUGGuCGUUGCGgAGCaGCUa -3'
miRNA:   3'- aGUGUGCUGUUuGCAGUGCgUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 35988 0.68 0.964985
Target:  5'- -gGCGCGGaGAGCGaaaCGCGCAGCGaCg -3'
miRNA:   3'- agUGUGCUgUUUGCa--GUGCGUCGCgG- -5'
24382 3' -52.3 NC_005264.1 + 36122 0.68 0.964985
Target:  5'- cUCGC-CGGCcGACGauuucuuugccCACGUAGCGCUg -3'
miRNA:   3'- -AGUGuGCUGuUUGCa----------GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 36132 0.69 0.936194
Target:  5'- cUACACGACGGACGagccCAUGgAG-GCCg -3'
miRNA:   3'- aGUGUGCUGUUUGCa---GUGCgUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 36263 0.67 0.978685
Target:  5'- -gGCGCGAUcugccgaagagugGAccACGUCuuCGCGGCGCg -3'
miRNA:   3'- agUGUGCUG-------------UU--UGCAGu-GCGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.